Manganese in PDB 2lal: Crystal Structure Determination and Refinement at 2.3 Angstroms Resolution of the Lentil Lectin

The structure of Crystal Structure Determination and Refinement at 2.3 Angstroms Resolution of the Lentil Lectin, PDB code: 2lal was solved by R.Loris, J.Steyaert, D.Maes, J.Lisgarten, R.Pickersgill, L.Wyns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	N/A / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	75.810, 125.470, 56.500, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The structure of Crystal Structure Determination and Refinement at 2.3 Angstroms Resolution of the Lentil Lectin also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Manganese atom in the Crystal Structure Determination and Refinement at 2.3 Angstroms Resolution of the Lentil Lectin (pdb code 2lal). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure Determination and Refinement at 2.3 Angstroms Resolution of the Lentil Lectin, PDB code: 2lal:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure Determination and Refinement at 2.3 Angstroms Resolution of the Lentil Lectin


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure Determination and Refinement at 2.3 Angstroms Resolution of the Lentil Lectin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn183 b:16.4 occ:1.00 O A:HOH231 2.2 13.3 1.0 O A:HOH232 2.2 11.8 1.0 OD1 A:ASP129 2.4 12.6 1.0 OE2 A:GLU119 2.4 15.6 1.0 NE2 A:HIS136 2.4 14.3 1.0 OD2 A:ASP121 2.4 18.6 1.0 CE1 A:HIS136 3.1 16.7 1.0 CG A:ASP121 3.3 9.2 1.0 CG A:ASP129 3.4 17.0 1.0 CD A:GLU119 3.4 32.6 1.0 CD2 A:HIS136 3.5 14.4 1.0 OE1 A:GLU119 3.6 12.2 1.0 CB A:ASP121 3.6 9.2 1.0 OD2 A:ASP129 3.8 16.4 1.0 O A:HOH191 4.1 17.6 1.0 OG A:SER146 4.1 11.8 1.0 CA A:CA184 4.2 7.0 1.0 ND1 A:HIS136 4.4 18.9 1.0 OD1 A:ASP121 4.4 18.9 1.0 O A:HOH243 4.5 17.0 1.0 O A:ILE144 4.5 13.2 1.0 CB A:ASP129 4.5 15.4 1.0 CD1 A:TRP128 4.6 12.3 1.0 CG A:HIS136 4.6 9.9 1.0 CA A:ASP129 4.6 8.4 1.0 CD A:PRO130 4.6 13.3 1.0 NE1 A:TRP128 4.7 13.8 1.0 CG A:GLU119 4.8 13.2 1.0

Manganese binding site 2 out of 2 in the Crystal Structure Determination and Refinement at 2.3 Angstroms Resolution of the Lentil Lectin


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure Determination and Refinement at 2.3 Angstroms Resolution of the Lentil Lectin within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn183 b:18.6 occ:1.00 OD2 C:ASP121 2.1 15.3 1.0 O C:HOH225 2.2 19.2 1.0 O C:HOH224 2.3 13.9 1.0 OE2 C:GLU119 2.3 17.1 1.0 NE2 C:HIS136 2.4 27.9 1.0 OD1 C:ASP129 2.4 13.5 1.0 CE1 C:HIS136 3.1 18.5 1.0 CG C:ASP121 3.3 24.9 1.0 CD C:GLU119 3.3 30.4 1.0 CG C:ASP129 3.4 21.0 1.0 OE1 C:GLU119 3.5 18.1 1.0 CD2 C:HIS136 3.6 24.0 1.0 CB C:ASP121 3.7 13.7 1.0 OD2 C:ASP129 3.8 18.2 1.0 O C:HOH220 3.9 20.9 1.0 OG C:SER146 4.2 12.0 1.0 OD1 C:ASP121 4.2 16.3 1.0 CA C:CA184 4.3 7.0 1.0 ND1 C:HIS136 4.3 23.0 1.0 O C:HOH233 4.5 24.9 1.0 O C:ILE144 4.5 23.8 1.0 CD C:PRO130 4.5 16.0 1.0 CB C:ASP129 4.5 13.4 1.0 CG C:HIS136 4.6 22.0 1.0 CD1 C:TRP128 4.7 13.0 1.0 CG C:GLU119 4.7 19.1 1.0 CA C:ASP129 4.7 13.2 1.0 NE1 C:TRP128 4.8 10.5 1.0

R.Loris, D.Van Overberge, M.H.Dao-Thi, F.Poortmans, N.Maene, L.Wyns. Structural Analysis of Two Crystal Forms of Lentil Lectin at 1.8 A Resolution. Proteins V. 20 330 1994.
ISSN: ISSN 0887-3585
PubMed: 7731952
DOI: 10.1002/PROT.340200406