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Manganese in PDB 2amh: Crystal Structure of Maf-Like Protein TBRU21784AAA From T.Brucei

Protein crystallography data

The structure of Crystal Structure of Maf-Like Protein TBRU21784AAA From T.Brucei, PDB code: 2amh was solved by J.Caruthers, E.Merritt, Structural Genomics Of Pathogenic Protozoaconsortium (Sgpp), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.00 / 2.00
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 97.068, 97.068, 48.894, 90.00, 90.00, 90.00
R / Rfree (%) 19.7 / 23.1

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Maf-Like Protein TBRU21784AAA From T.Brucei (pdb code 2amh). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 3 binding sites of Manganese where determined in the Crystal Structure of Maf-Like Protein TBRU21784AAA From T.Brucei, PDB code: 2amh:
Jump to Manganese binding site number: 1; 2; 3;

Manganese binding site 1 out of 3 in 2amh

Go back to Manganese Binding Sites List in 2amh
Manganese binding site 1 out of 3 in the Crystal Structure of Maf-Like Protein TBRU21784AAA From T.Brucei


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Maf-Like Protein TBRU21784AAA From T.Brucei within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1001

b:44.0
occ:1.00
O A:HOH3080 2.2 37.8 1.0
O3 A:SO4401 2.3 30.0 1.0
OE1 A:GLU45 2.4 33.6 1.0
O A:HOH3086 2.4 31.9 1.0
O1 A:SO4400 2.4 31.7 1.0
CD A:GLU45 3.4 33.6 1.0
S A:SO4401 3.4 29.1 1.0
O2 A:SO4401 3.5 30.6 1.0
S A:SO4400 3.7 32.0 1.0
NZ A:LYS64 3.7 20.5 1.0
OE2 A:GLU45 3.8 33.7 1.0
O2 A:SO4400 3.8 31.5 1.0
MN A:MN2001 4.0 25.5 1.0
O A:HOH3028 4.1 25.2 1.0
CE A:LYS64 4.3 22.9 1.0
O1 A:SO4401 4.4 29.7 1.0
O4 A:SO4401 4.4 29.9 1.0
NZ A:LYS101 4.4 30.4 1.0
O3 A:SO4400 4.4 30.2 1.0
O4 A:SO4400 4.7 32.0 1.0
CE A:LYS101 4.7 27.3 1.0
CG A:GLU45 4.7 33.6 1.0
O A:HOH3064 4.7 37.7 1.0

Manganese binding site 2 out of 3 in 2amh

Go back to Manganese Binding Sites List in 2amh
Manganese binding site 2 out of 3 in the Crystal Structure of Maf-Like Protein TBRU21784AAA From T.Brucei


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Maf-Like Protein TBRU21784AAA From T.Brucei within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn2001

b:25.5
occ:1.00
O A:HOH3087 1.9 21.7 1.0
OE2 A:GLU45 2.1 33.7 1.0
OD1 A:ASP89 2.2 18.4 1.0
O1 A:SO4400 2.3 31.7 1.0
O4 A:SO4400 2.5 32.0 1.0
S A:SO4400 3.0 32.0 1.0
CD A:GLU45 3.2 33.6 1.0
CG A:ASP89 3.3 17.4 1.0
OE2 A:GLU100 3.5 33.0 1.0
OE1 A:GLU45 3.6 33.6 1.0
OD2 A:ASP89 3.7 17.7 1.0
CD A:GLU100 3.8 31.4 1.0
NZ A:LYS64 4.0 20.5 1.0
O3 A:SO4400 4.0 30.2 1.0
O A:HOH3086 4.0 31.9 1.0
MN A:MN1001 4.0 44.0 1.0
O2 A:SO4400 4.1 31.5 1.0
OE1 A:GLU100 4.2 30.8 1.0
CG A:GLU100 4.3 26.9 1.0
O A:GLN90 4.4 15.9 1.0
CB A:ASP89 4.5 16.6 1.0
CG A:GLU45 4.5 33.6 1.0
N A:GLN90 4.6 16.1 1.0
CE A:LYS64 4.6 22.9 1.0
CG2 A:ILE60 4.7 21.9 1.0
CD1 A:ILE60 4.7 21.8 1.0
CA A:ASP89 4.8 16.8 1.0
CB A:GLU45 4.8 34.1 1.0
O A:HOH3056 5.0 44.5 1.0

Manganese binding site 3 out of 3 in 2amh

Go back to Manganese Binding Sites List in 2amh
Manganese binding site 3 out of 3 in the Crystal Structure of Maf-Like Protein TBRU21784AAA From T.Brucei


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of Maf-Like Protein TBRU21784AAA From T.Brucei within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn3001

b:33.1
occ:1.00
NE2 A:HIS140 2.2 22.7 1.0
O A:HOH3083 2.3 34.6 1.0
O A:HOH3084 2.3 31.2 1.0
O A:HOH3085 2.4 36.0 1.0
O A:HOH3013 2.4 25.8 1.0
O A:HOH3081 2.5 25.4 1.0
CD2 A:HIS140 3.1 20.7 1.0
CE1 A:HIS140 3.3 22.6 1.0
OE1 A:GLU58 3.8 24.4 1.0
CG A:HIS140 4.3 19.5 1.0
O A:HOH3012 4.3 43.4 1.0
ND1 A:HIS140 4.4 21.9 1.0
CB A:PHE54 4.6 25.0 1.0

Reference:

J.Caruthers, E.Merritt, Structural Genomics Of Pathogenic Protozoa Consortium (Sgpp). Crystal Structure of Maf-Like Protein TBRU21784AAA From T.Brucei To Be Published.
Page generated: Sat Oct 5 13:27:41 2024

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