Manganese in PDB 6iwq: Crystal Structure of Galnac-T7 with MN2+

The structure of Crystal Structure of Galnac-T7 with MN2+, PDB code: 6iwq was solved by C.Yu, Y.X.Yin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.25 / 2.95
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	137.695, 158.233, 251.870, 90.00, 90.00, 90.00
R / Rfree (%)	22.5 / 23.9

The binding sites of Manganese atom in the Crystal Structure of Galnac-T7 with MN2+ (pdb code 6iwq). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 6 binding sites of Manganese where determined in the Crystal Structure of Galnac-T7 with MN2+, PDB code: 6iwq:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6;

Manganese binding site 1 out of 6 in the Crystal Structure of Galnac-T7 with MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Galnac-T7 with MN2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn701 b:87.8 occ:1.00 OD2 A:ASP301 2.8 37.2 1.0 NE2 A:HIS303 2.9 42.0 1.0 NE2 A:HIS440 3.2 37.1 1.0 CE1 A:HIS440 3.3 40.5 1.0 CE1 A:HIS303 3.5 39.7 1.0 CG A:ASP301 4.0 53.5 1.0 NH1 A:ARG443 4.1 40.9 1.0 CD2 A:HIS303 4.2 38.7 1.0 OD1 A:ASP301 4.4 62.4 1.0 CD2 A:HIS440 4.6 38.7 1.0 ND1 A:HIS440 4.7 35.8 1.0 ND1 A:HIS303 4.7 32.5 1.0

Manganese binding site 2 out of 6 in the Crystal Structure of Galnac-T7 with MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Galnac-T7 with MN2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn701 b:80.3 occ:1.00 OD2 B:ASP301 2.4 51.5 1.0 CE1 B:HIS303 3.0 39.1 1.0 CE1 B:HIS440 3.1 44.7 1.0 NE2 B:HIS440 3.1 44.5 1.0 CG B:ASP301 3.5 51.7 1.0 NE2 B:HIS303 3.7 38.4 1.0 OD1 B:ASP301 3.9 55.1 1.0 ND1 B:HIS303 4.1 40.9 1.0 ND1 B:HIS440 4.4 43.1 1.0 CD2 B:HIS440 4.5 37.5 1.0 NH1 B:ARG443 4.5 55.9 1.0 CB B:ASP301 4.8 36.6 1.0

Manganese binding site 3 out of 6 in the Crystal Structure of Galnac-T7 with MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of Galnac-T7 with MN2+ within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn701 b:73.5 occ:1.00 OD2 C:ASP301 2.8 54.7 1.0 NE2 C:HIS440 3.2 53.4 1.0 NE2 C:HIS303 3.2 34.2 1.0 CE1 C:HIS440 3.4 51.7 1.0 CE1 C:HIS303 3.8 36.7 1.0 CG C:ASP301 3.9 57.9 1.0 OD1 C:ASP301 4.2 56.3 1.0 CD2 C:HIS303 4.4 38.9 1.0 NH1 C:ARG443 4.4 40.1 1.0 CD2 C:HIS440 4.5 45.3 1.0 ND1 C:HIS440 4.7 39.9 1.0

Manganese binding site 4 out of 6 in the Crystal Structure of Galnac-T7 with MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structure of Galnac-T7 with MN2+ within 5.0Å range: probe atom residue distance (Å) B Occ D:Mn701 b:75.0 occ:1.00 OD2 D:ASP301 3.1 56.1 1.0 NE2 D:HIS440 3.5 51.0 1.0 NE2 D:HIS303 3.8 49.0 1.0 CE1 D:HIS440 3.9 53.6 1.0 CG D:ASP301 4.1 52.9 1.0 OD1 D:ASP301 4.3 59.4 1.0 CE1 D:HIS303 4.4 57.3 1.0 NH1 D:ARG443 4.5 60.3 1.0 CD2 D:HIS440 4.8 57.2 1.0

Manganese binding site 5 out of 6 in the Crystal Structure of Galnac-T7 with MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Crystal Structure of Galnac-T7 with MN2+ within 5.0Å range: probe atom residue distance (Å) B Occ E:Mn701 b:90.8 occ:1.00 OD2 E:ASP301 2.3 55.0 1.0 NE2 E:HIS440 2.4 48.5 1.0 NE2 E:HIS303 2.7 43.6 1.0 CE1 E:HIS440 2.8 48.3 1.0 CG E:ASP301 3.5 52.5 1.0 CE1 E:HIS303 3.6 42.7 1.0 CD2 E:HIS440 3.8 43.2 1.0 CD2 E:HIS303 3.8 44.3 1.0 ND1 E:HIS440 4.1 40.9 1.0 OD1 E:ASP301 4.2 50.5 1.0 NH1 E:ARG443 4.5 62.6 1.0 CG E:HIS440 4.6 39.1 1.0 CB E:ASP301 4.6 41.7 1.0 O E:ILE441 4.7 45.3 1.0 ND1 E:HIS303 4.8 44.0 1.0 CG E:HIS303 4.9 39.2 1.0

Manganese binding site 6 out of 6 in the Crystal Structure of Galnac-T7 with MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Crystal Structure of Galnac-T7 with MN2+ within 5.0Å range: probe atom residue distance (Å) B Occ F:Mn701 b:82.7 occ:1.00 OD2 F:ASP301 2.4 62.8 1.0 NE2 F:HIS440 2.6 66.9 1.0 NE2 F:HIS303 2.7 62.0 1.0 CE1 F:HIS440 3.0 63.8 1.0 CE1 F:HIS303 3.4 64.5 1.0 CG F:ASP301 3.6 69.0 1.0 CD2 F:HIS303 3.8 64.2 1.0 CD2 F:HIS440 3.9 67.2 1.0 OD1 F:ASP301 4.1 70.4 1.0 ND1 F:HIS440 4.3 65.6 1.0 ND1 F:HIS303 4.6 64.8 1.0 CG F:HIS440 4.7 64.1 1.0 CB F:ASP301 4.7 64.8 1.0 CG F:HIS303 4.9 62.2 1.0

C.Yu, L.Liang, Y.Yin. Structural Basis of Carbohydrate Transfer Activity of Udp-Galnac: Polypeptide N-Acetylgalactosaminyltransferase 7. Biochem. Biophys. Res. V. 510 266 2019COMMUN..
ISSN: ESSN 1090-2104
PubMed: 30685086
DOI: 10.1016/J.BBRC.2019.01.084