Manganese in PDB 9cq5: Mn-Bound Rubisco From Spinach with Cabp Inhibitor
Enzymatic activity of Mn-Bound Rubisco From Spinach with Cabp Inhibitor
All present enzymatic activity of Mn-Bound Rubisco From Spinach with Cabp Inhibitor:
4.1.1.39;
Protein crystallography data
The structure of Mn-Bound Rubisco From Spinach with Cabp Inhibitor, PDB code: 9cq5
was solved by
R.W.Voland,
K.M.Lancaster,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
99.51 /
2.50
|
|
Space group
|
P 21 21 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
218.029,
218.893,
111.84,
90,
90,
90
|
|
R / Rfree (%)
|
19.7 /
24.2
|
Manganese Binding Sites:
The binding sites of Manganese atom in the Mn-Bound Rubisco From Spinach with Cabp Inhibitor
(pdb code 9cq5). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the
Mn-Bound Rubisco From Spinach with Cabp Inhibitor, PDB code: 9cq5:
Jump to Manganese binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Manganese binding site 1 out
of 8 in 9cq5
Go back to
Manganese Binding Sites List in 9cq5
Manganese binding site 1 out
of 8 in the Mn-Bound Rubisco From Spinach with Cabp Inhibitor
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Mn-Bound Rubisco From Spinach with Cabp Inhibitor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn501
b:49.0
occ:1.00
|
O6
|
A:CAP502
|
1.8
|
49.2
|
1.0
|
|
OQ2
|
A:KCX201
|
1.9
|
47.0
|
1.0
|
|
OD1
|
A:ASP203
|
2.0
|
57.6
|
1.0
|
|
OE1
|
A:GLU204
|
2.1
|
43.7
|
1.0
|
|
O2
|
A:CAP502
|
2.4
|
51.7
|
1.0
|
|
O3
|
A:CAP502
|
2.5
|
42.5
|
1.0
|
|
C
|
A:CAP502
|
2.7
|
50.6
|
1.0
|
|
CX
|
A:KCX201
|
2.9
|
44.3
|
1.0
|
|
C2
|
A:CAP502
|
2.9
|
51.2
|
1.0
|
|
CD
|
A:GLU204
|
3.1
|
48.5
|
1.0
|
|
OQ1
|
A:KCX201
|
3.2
|
41.4
|
1.0
|
|
CG
|
A:ASP203
|
3.2
|
51.0
|
1.0
|
|
C3
|
A:CAP502
|
3.3
|
42.6
|
1.0
|
|
OE2
|
A:GLU204
|
3.5
|
50.8
|
1.0
|
|
OD2
|
A:ASP203
|
3.8
|
47.6
|
1.0
|
|
CG2
|
A:THR173
|
3.8
|
43.1
|
1.0
|
|
O7
|
A:CAP502
|
3.8
|
53.7
|
1.0
|
|
NE2
|
A:HIS294
|
3.9
|
43.4
|
1.0
|
|
N
|
A:GLU204
|
4.0
|
42.1
|
1.0
|
|
ND2
|
B:ASN123
|
4.0
|
45.0
|
1.0
|
|
NZ
|
A:KCX201
|
4.0
|
46.2
|
1.0
|
|
NZ
|
A:LYS177
|
4.0
|
44.6
|
1.0
|
|
CB
|
A:ASP203
|
4.3
|
49.5
|
1.0
|
|
CA
|
A:ASP203
|
4.3
|
43.4
|
1.0
|
|
NZ
|
A:LYS175
|
4.3
|
49.7
|
1.0
|
|
C4
|
A:CAP502
|
4.4
|
42.9
|
1.0
|
|
C1
|
A:CAP502
|
4.4
|
50.6
|
1.0
|
|
CG
|
A:GLU204
|
4.4
|
42.2
|
1.0
|
|
CB
|
A:GLU204
|
4.6
|
44.3
|
1.0
|
|
CE1
|
A:HIS294
|
4.7
|
40.5
|
1.0
|
|
CD2
|
A:HIS294
|
4.7
|
39.5
|
1.0
|
|
C
|
A:ASP203
|
4.7
|
44.1
|
1.0
|
|
O1
|
A:CAP502
|
4.7
|
47.8
|
1.0
|
|
CB
|
A:THR173
|
4.8
|
41.3
|
1.0
|
|
OG1
|
A:THR173
|
4.9
|
53.5
|
1.0
|
|
C5
|
A:CAP502
|
4.9
|
48.0
|
1.0
|
|
CA
|
A:GLU204
|
4.9
|
44.3
|
1.0
|
|
Manganese binding site 2 out
of 8 in 9cq5
Go back to
Manganese Binding Sites List in 9cq5
Manganese binding site 2 out
of 8 in the Mn-Bound Rubisco From Spinach with Cabp Inhibitor
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Mn-Bound Rubisco From Spinach with Cabp Inhibitor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn501
b:54.6
occ:1.00
|
OQ1
|
B:KCX201
|
1.8
|
51.1
|
1.0
|
|
O6
|
B:CAP502
|
2.0
|
59.8
|
1.0
|
|
OD1
|
B:ASP203
|
2.2
|
61.8
|
1.0
|
|
OE1
|
B:GLU204
|
2.2
|
55.3
|
1.0
|
|
O2
|
B:CAP502
|
2.5
|
54.6
|
1.0
|
|
O3
|
B:CAP502
|
2.8
|
52.4
|
1.0
|
|
CX
|
B:KCX201
|
2.9
|
54.9
|
1.0
|
|
C
|
B:CAP502
|
2.9
|
52.1
|
1.0
|
|
C2
|
B:CAP502
|
3.1
|
57.9
|
1.0
|
|
OQ2
|
B:KCX201
|
3.3
|
52.9
|
1.0
|
|
CG
|
B:ASP203
|
3.3
|
58.4
|
1.0
|
|
CD
|
B:GLU204
|
3.3
|
56.4
|
1.0
|
|
C3
|
B:CAP502
|
3.5
|
56.4
|
1.0
|
|
NZ
|
B:LYS175
|
3.7
|
55.9
|
1.0
|
|
NZ
|
B:LYS177
|
3.7
|
57.7
|
1.0
|
|
OD2
|
B:ASP203
|
3.8
|
64.5
|
1.0
|
|
ND2
|
A:ASN123
|
3.9
|
49.4
|
1.0
|
|
OE2
|
B:GLU204
|
3.9
|
54.7
|
1.0
|
|
NE2
|
B:HIS294
|
3.9
|
46.4
|
1.0
|
|
NZ
|
B:KCX201
|
4.0
|
55.4
|
1.0
|
|
N
|
B:GLU204
|
4.0
|
51.2
|
1.0
|
|
CG2
|
B:THR173
|
4.0
|
55.8
|
1.0
|
|
O7
|
B:CAP502
|
4.0
|
49.0
|
1.0
|
|
CE
|
B:LYS177
|
4.2
|
62.4
|
1.0
|
|
CB
|
B:ASP203
|
4.5
|
50.9
|
1.0
|
|
CA
|
B:ASP203
|
4.5
|
52.2
|
1.0
|
|
CG
|
B:GLU204
|
4.5
|
51.1
|
1.0
|
|
C4
|
B:CAP502
|
4.5
|
52.8
|
1.0
|
|
C1
|
B:CAP502
|
4.5
|
62.2
|
1.0
|
|
CD2
|
B:HIS294
|
4.6
|
48.0
|
1.0
|
|
CB
|
B:GLU204
|
4.6
|
50.2
|
1.0
|
|
C
|
B:ASP203
|
4.8
|
55.7
|
1.0
|
|
CE1
|
B:HIS294
|
4.8
|
40.6
|
1.0
|
|
C5
|
B:CAP502
|
4.9
|
51.4
|
1.0
|
|
O1
|
B:CAP502
|
4.9
|
55.9
|
1.0
|
|
CA
|
B:GLU204
|
4.9
|
49.5
|
1.0
|
|
Manganese binding site 3 out
of 8 in 9cq5
Go back to
Manganese Binding Sites List in 9cq5
Manganese binding site 3 out
of 8 in the Mn-Bound Rubisco From Spinach with Cabp Inhibitor
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Mn-Bound Rubisco From Spinach with Cabp Inhibitor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn501
b:46.2
occ:1.00
|
OD1
|
C:ASP203
|
2.0
|
44.2
|
1.0
|
|
OQ2
|
C:KCX201
|
2.0
|
38.1
|
1.0
|
|
OE1
|
C:GLU204
|
2.2
|
41.1
|
1.0
|
|
O6
|
C:CAP502
|
2.2
|
45.5
|
1.0
|
|
O3
|
C:CAP502
|
2.2
|
39.8
|
1.0
|
|
O2
|
C:CAP502
|
2.3
|
46.9
|
1.0
|
|
C
|
C:CAP502
|
2.9
|
44.6
|
1.0
|
|
C2
|
C:CAP502
|
2.9
|
47.1
|
1.0
|
|
CX
|
C:KCX201
|
3.0
|
39.6
|
1.0
|
|
CG
|
C:ASP203
|
3.0
|
42.5
|
1.0
|
|
C3
|
C:CAP502
|
3.1
|
42.2
|
1.0
|
|
CD
|
C:GLU204
|
3.4
|
39.3
|
1.0
|
|
OQ1
|
C:KCX201
|
3.4
|
46.9
|
1.0
|
|
OD2
|
C:ASP203
|
3.6
|
44.1
|
1.0
|
|
NZ
|
C:LYS177
|
3.8
|
34.7
|
1.0
|
|
NZ
|
C:LYS175
|
3.9
|
39.5
|
1.0
|
|
ND2
|
D:ASN123
|
3.9
|
38.0
|
1.0
|
|
OE2
|
C:GLU204
|
4.0
|
43.5
|
1.0
|
|
NE2
|
C:HIS294
|
4.0
|
41.7
|
1.0
|
|
N
|
C:GLU204
|
4.0
|
35.9
|
1.0
|
|
O7
|
C:CAP502
|
4.0
|
41.9
|
1.0
|
|
CG2
|
C:THR173
|
4.1
|
36.2
|
1.0
|
|
NZ
|
C:KCX201
|
4.1
|
43.7
|
1.0
|
|
CB
|
C:ASP203
|
4.2
|
41.0
|
1.0
|
|
CA
|
C:ASP203
|
4.3
|
37.7
|
1.0
|
|
C4
|
C:CAP502
|
4.3
|
42.0
|
1.0
|
|
C1
|
C:CAP502
|
4.4
|
41.8
|
1.0
|
|
CG
|
C:GLU204
|
4.6
|
38.7
|
1.0
|
|
CB
|
C:GLU204
|
4.6
|
35.8
|
1.0
|
|
CD2
|
C:HIS294
|
4.7
|
39.2
|
1.0
|
|
C
|
C:ASP203
|
4.7
|
40.3
|
1.0
|
|
O1
|
C:CAP502
|
4.8
|
40.3
|
1.0
|
|
C5
|
C:CAP502
|
4.8
|
44.2
|
1.0
|
|
CE1
|
C:HIS294
|
4.9
|
39.4
|
1.0
|
|
CE
|
C:LYS175
|
5.0
|
34.3
|
1.0
|
|
CA
|
C:GLU204
|
5.0
|
36.5
|
1.0
|
|
Manganese binding site 4 out
of 8 in 9cq5
Go back to
Manganese Binding Sites List in 9cq5
Manganese binding site 4 out
of 8 in the Mn-Bound Rubisco From Spinach with Cabp Inhibitor
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Mn-Bound Rubisco From Spinach with Cabp Inhibitor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mn501
b:53.9
occ:1.00
|
OD1
|
D:ASP203
|
1.8
|
52.6
|
1.0
|
|
OQ2
|
D:KCX201
|
1.9
|
50.3
|
1.0
|
|
O2
|
D:CAP502
|
2.2
|
54.2
|
1.0
|
|
OE1
|
D:GLU204
|
2.2
|
45.8
|
1.0
|
|
O6
|
D:CAP502
|
2.4
|
55.6
|
1.0
|
|
O3
|
D:CAP502
|
2.6
|
46.7
|
1.0
|
|
C2
|
D:CAP502
|
3.0
|
51.9
|
1.0
|
|
CG
|
D:ASP203
|
3.0
|
53.3
|
1.0
|
|
C
|
D:CAP502
|
3.1
|
51.0
|
1.0
|
|
CX
|
D:KCX201
|
3.1
|
48.1
|
1.0
|
|
C3
|
D:CAP502
|
3.3
|
52.7
|
1.0
|
|
CD
|
D:GLU204
|
3.3
|
49.8
|
1.0
|
|
OQ1
|
D:KCX201
|
3.6
|
48.2
|
1.0
|
|
OD2
|
D:ASP203
|
3.8
|
51.6
|
1.0
|
|
OE2
|
D:GLU204
|
3.8
|
51.9
|
1.0
|
|
N
|
D:GLU204
|
3.9
|
45.7
|
1.0
|
|
ND2
|
C:ASN123
|
4.0
|
45.5
|
1.0
|
|
CG2
|
D:THR173
|
4.0
|
50.3
|
1.0
|
|
NE2
|
D:HIS294
|
4.0
|
49.8
|
1.0
|
|
CE
|
D:LYS177
|
4.0
|
50.2
|
1.0
|
|
CB
|
D:ASP203
|
4.1
|
50.3
|
1.0
|
|
NZ
|
D:LYS177
|
4.1
|
54.3
|
1.0
|
|
NZ
|
D:LYS175
|
4.1
|
46.7
|
1.0
|
|
NZ
|
D:KCX201
|
4.1
|
48.7
|
1.0
|
|
CA
|
D:ASP203
|
4.2
|
50.3
|
1.0
|
|
O7
|
D:CAP502
|
4.3
|
55.2
|
1.0
|
|
C1
|
D:CAP502
|
4.4
|
52.7
|
1.0
|
|
CG
|
D:GLU204
|
4.5
|
47.3
|
1.0
|
|
C4
|
D:CAP502
|
4.6
|
51.3
|
1.0
|
|
C
|
D:ASP203
|
4.6
|
47.9
|
1.0
|
|
CB
|
D:GLU204
|
4.6
|
44.9
|
1.0
|
|
CE1
|
D:HIS294
|
4.8
|
47.6
|
1.0
|
|
CD2
|
D:HIS294
|
4.8
|
43.0
|
1.0
|
|
O1
|
D:CAP502
|
4.8
|
52.5
|
1.0
|
|
CA
|
D:GLU204
|
4.9
|
45.3
|
1.0
|
|
Manganese binding site 5 out
of 8 in 9cq5
Go back to
Manganese Binding Sites List in 9cq5
Manganese binding site 5 out
of 8 in the Mn-Bound Rubisco From Spinach with Cabp Inhibitor
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Mn-Bound Rubisco From Spinach with Cabp Inhibitor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn501
b:50.8
occ:1.00
|
OD1
|
E:ASP203
|
1.8
|
49.4
|
1.0
|
|
OE1
|
E:GLU204
|
2.0
|
34.7
|
1.0
|
|
O6
|
E:CAP502
|
2.0
|
45.9
|
1.0
|
|
OQ2
|
E:KCX201
|
2.0
|
45.3
|
1.0
|
|
O3
|
E:CAP502
|
2.6
|
37.5
|
1.0
|
|
O2
|
E:CAP502
|
2.6
|
44.9
|
1.0
|
|
C
|
E:CAP502
|
2.8
|
39.8
|
1.0
|
|
CG
|
E:ASP203
|
3.0
|
40.5
|
1.0
|
|
C2
|
E:CAP502
|
3.0
|
39.1
|
1.0
|
|
CD
|
E:GLU204
|
3.1
|
41.6
|
1.0
|
|
CX
|
E:KCX201
|
3.1
|
42.5
|
1.0
|
|
C3
|
E:CAP502
|
3.3
|
41.0
|
1.0
|
|
OQ1
|
E:KCX201
|
3.6
|
42.5
|
1.0
|
|
OE2
|
E:GLU204
|
3.7
|
44.2
|
1.0
|
|
OD2
|
E:ASP203
|
3.7
|
43.7
|
1.0
|
|
NE2
|
E:HIS294
|
3.8
|
31.1
|
1.0
|
|
NZ
|
E:LYS177
|
3.8
|
42.7
|
1.0
|
|
N
|
E:GLU204
|
3.9
|
43.1
|
1.0
|
|
ND2
|
F:ASN123
|
4.0
|
43.1
|
1.0
|
|
O7
|
E:CAP502
|
4.0
|
39.2
|
1.0
|
|
CB
|
E:ASP203
|
4.1
|
38.3
|
1.0
|
|
NZ
|
E:LYS175
|
4.1
|
34.0
|
1.0
|
|
CA
|
E:ASP203
|
4.1
|
37.3
|
1.0
|
|
NZ
|
E:KCX201
|
4.2
|
40.4
|
1.0
|
|
CG
|
E:GLU204
|
4.3
|
38.5
|
1.0
|
|
CD2
|
E:HIS294
|
4.4
|
33.6
|
1.0
|
|
CG2
|
E:THR173
|
4.4
|
40.7
|
1.0
|
|
C1
|
E:CAP502
|
4.5
|
37.6
|
1.0
|
|
CB
|
E:GLU204
|
4.5
|
32.6
|
1.0
|
|
C4
|
E:CAP502
|
4.5
|
41.1
|
1.0
|
|
C
|
E:ASP203
|
4.6
|
44.6
|
1.0
|
|
O1
|
E:CAP502
|
4.8
|
33.7
|
1.0
|
|
CE1
|
E:HIS294
|
4.8
|
34.9
|
1.0
|
|
CA
|
E:GLU204
|
4.9
|
42.3
|
1.0
|
|
OG1
|
E:THR173
|
4.9
|
43.2
|
1.0
|
|
C5
|
E:CAP502
|
4.9
|
39.9
|
1.0
|
|
Manganese binding site 6 out
of 8 in 9cq5
Go back to
Manganese Binding Sites List in 9cq5
Manganese binding site 6 out
of 8 in the Mn-Bound Rubisco From Spinach with Cabp Inhibitor
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Mn-Bound Rubisco From Spinach with Cabp Inhibitor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mn501
b:50.0
occ:1.00
|
OE1
|
F:GLU204
|
1.8
|
57.7
|
1.0
|
|
O3
|
F:CAP502
|
2.2
|
51.0
|
1.0
|
|
OD1
|
F:ASP203
|
2.3
|
58.8
|
1.0
|
|
O2
|
F:CAP502
|
2.3
|
52.2
|
1.0
|
|
OQ2
|
F:KCX201
|
2.4
|
55.5
|
1.0
|
|
O6
|
F:CAP502
|
2.5
|
57.3
|
1.0
|
|
CD
|
F:GLU204
|
2.8
|
57.9
|
1.0
|
|
C2
|
F:CAP502
|
2.9
|
54.7
|
1.0
|
|
OE2
|
F:GLU204
|
3.0
|
59.9
|
1.0
|
|
C
|
F:CAP502
|
3.1
|
57.0
|
1.0
|
|
C3
|
F:CAP502
|
3.1
|
49.9
|
1.0
|
|
CG
|
F:ASP203
|
3.3
|
57.1
|
1.0
|
|
CX
|
F:KCX201
|
3.4
|
53.7
|
1.0
|
|
NZ
|
F:LYS177
|
3.5
|
52.7
|
1.0
|
|
OQ1
|
F:KCX201
|
3.7
|
50.9
|
1.0
|
|
ND2
|
E:ASN123
|
3.8
|
46.3
|
1.0
|
|
NE2
|
F:HIS294
|
3.9
|
44.9
|
1.0
|
|
N
|
F:GLU204
|
4.0
|
49.8
|
1.0
|
|
CB
|
F:ASP203
|
4.1
|
53.0
|
1.0
|
|
CG
|
F:GLU204
|
4.2
|
45.0
|
1.0
|
|
OD2
|
F:ASP203
|
4.2
|
53.4
|
1.0
|
|
NZ
|
F:LYS175
|
4.2
|
50.3
|
1.0
|
|
C4
|
F:CAP502
|
4.3
|
51.2
|
1.0
|
|
CA
|
F:ASP203
|
4.3
|
48.1
|
1.0
|
|
O7
|
F:CAP502
|
4.3
|
60.5
|
1.0
|
|
CG2
|
F:THR173
|
4.4
|
51.1
|
1.0
|
|
C1
|
F:CAP502
|
4.4
|
62.2
|
1.0
|
|
NZ
|
F:KCX201
|
4.5
|
56.8
|
1.0
|
|
CD2
|
F:HIS294
|
4.6
|
44.2
|
1.0
|
|
CB
|
F:GLU204
|
4.7
|
44.2
|
1.0
|
|
C
|
F:ASP203
|
4.7
|
53.3
|
1.0
|
|
C5
|
F:CAP502
|
4.7
|
48.1
|
1.0
|
|
CE
|
F:LYS177
|
4.8
|
55.1
|
1.0
|
|
O1
|
F:CAP502
|
4.9
|
56.8
|
1.0
|
|
CE1
|
F:HIS294
|
4.9
|
47.7
|
1.0
|
|
CA
|
F:GLU204
|
5.0
|
45.7
|
1.0
|
|
CG
|
E:ASN123
|
5.0
|
45.9
|
1.0
|
|
Manganese binding site 7 out
of 8 in 9cq5
Go back to
Manganese Binding Sites List in 9cq5
Manganese binding site 7 out
of 8 in the Mn-Bound Rubisco From Spinach with Cabp Inhibitor
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Mn-Bound Rubisco From Spinach with Cabp Inhibitor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mn501
b:47.8
occ:1.00
|
OD1
|
G:ASP203
|
1.9
|
47.9
|
1.0
|
|
O2
|
G:CAP502
|
2.2
|
48.9
|
1.0
|
|
OE1
|
G:GLU204
|
2.2
|
37.4
|
1.0
|
|
O3
|
G:CAP502
|
2.3
|
44.3
|
1.0
|
|
O6
|
G:CAP502
|
2.4
|
48.4
|
1.0
|
|
OQ2
|
G:KCX201
|
2.6
|
44.9
|
1.0
|
|
C2
|
G:CAP502
|
2.9
|
45.3
|
1.0
|
|
C
|
G:CAP502
|
3.0
|
44.2
|
1.0
|
|
CG
|
G:ASP203
|
3.1
|
45.8
|
1.0
|
|
C3
|
G:CAP502
|
3.1
|
44.2
|
1.0
|
|
CD
|
G:GLU204
|
3.3
|
37.6
|
1.0
|
|
CX
|
G:KCX201
|
3.4
|
43.3
|
1.0
|
|
OQ1
|
G:KCX201
|
3.4
|
42.1
|
1.0
|
|
NZ
|
G:LYS177
|
3.6
|
40.4
|
1.0
|
|
OD2
|
G:ASP203
|
3.7
|
39.2
|
1.0
|
|
OE2
|
G:GLU204
|
3.8
|
47.0
|
1.0
|
|
ND2
|
H:ASN123
|
3.9
|
37.4
|
1.0
|
|
CE1
|
G:HIS294
|
4.0
|
41.5
|
1.0
|
|
NZ
|
G:LYS175
|
4.0
|
36.3
|
1.0
|
|
N
|
G:GLU204
|
4.1
|
36.8
|
1.0
|
|
CG2
|
G:THR173
|
4.1
|
41.2
|
1.0
|
|
O7
|
G:CAP502
|
4.2
|
50.3
|
1.0
|
|
CB
|
G:ASP203
|
4.3
|
40.8
|
1.0
|
|
C1
|
G:CAP502
|
4.3
|
44.1
|
1.0
|
|
CA
|
G:ASP203
|
4.3
|
40.3
|
1.0
|
|
C4
|
G:CAP502
|
4.4
|
43.1
|
1.0
|
|
NZ
|
G:KCX201
|
4.5
|
39.8
|
1.0
|
|
CG
|
G:GLU204
|
4.5
|
37.4
|
1.0
|
|
ND1
|
G:HIS294
|
4.7
|
41.9
|
1.0
|
|
O1
|
G:CAP502
|
4.7
|
36.1
|
1.0
|
|
CB
|
G:GLU204
|
4.7
|
35.5
|
1.0
|
|
C
|
G:ASP203
|
4.8
|
44.2
|
1.0
|
|
C5
|
G:CAP502
|
4.8
|
45.9
|
1.0
|
|
CE
|
G:LYS177
|
5.0
|
43.6
|
1.0
|
|
NE2
|
G:HIS294
|
5.0
|
37.9
|
1.0
|
|
OG1
|
G:THR173
|
5.0
|
45.5
|
1.0
|
|
Manganese binding site 8 out
of 8 in 9cq5
Go back to
Manganese Binding Sites List in 9cq5
Manganese binding site 8 out
of 8 in the Mn-Bound Rubisco From Spinach with Cabp Inhibitor
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Mn-Bound Rubisco From Spinach with Cabp Inhibitor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mn501
b:63.6
occ:1.00
|
O3
|
H:CAP502
|
2.1
|
52.5
|
1.0
|
|
OQ2
|
H:KCX201
|
2.1
|
53.1
|
1.0
|
|
OD1
|
H:ASP203
|
2.2
|
47.3
|
1.0
|
|
OE1
|
H:GLU204
|
2.3
|
49.8
|
1.0
|
|
O2
|
H:CAP502
|
2.3
|
51.7
|
1.0
|
|
O6
|
H:CAP502
|
2.4
|
51.5
|
1.0
|
|
C2
|
H:CAP502
|
2.9
|
49.6
|
1.0
|
|
C
|
H:CAP502
|
2.9
|
49.2
|
1.0
|
|
C3
|
H:CAP502
|
3.0
|
47.6
|
1.0
|
|
CX
|
H:KCX201
|
3.2
|
52.0
|
1.0
|
|
CG
|
H:ASP203
|
3.4
|
50.0
|
1.0
|
|
CD
|
H:GLU204
|
3.4
|
49.1
|
1.0
|
|
NZ
|
H:LYS177
|
3.6
|
47.2
|
1.0
|
|
OQ1
|
H:KCX201
|
3.6
|
54.3
|
1.0
|
|
ND2
|
G:ASN123
|
3.6
|
40.8
|
1.0
|
|
OD2
|
H:ASP203
|
4.0
|
54.5
|
1.0
|
|
NE2
|
H:HIS294
|
4.0
|
46.5
|
1.0
|
|
OE2
|
H:GLU204
|
4.0
|
47.7
|
1.0
|
|
C4
|
H:CAP502
|
4.1
|
47.8
|
1.0
|
|
O7
|
H:CAP502
|
4.1
|
51.8
|
1.0
|
|
N
|
H:GLU204
|
4.1
|
45.8
|
1.0
|
|
NZ
|
H:LYS175
|
4.2
|
53.4
|
1.0
|
|
NZ
|
H:KCX201
|
4.3
|
45.8
|
1.0
|
|
C1
|
H:CAP502
|
4.4
|
48.5
|
1.0
|
|
CG2
|
H:THR173
|
4.4
|
42.0
|
1.0
|
|
CB
|
H:ASP203
|
4.5
|
45.5
|
1.0
|
|
CA
|
H:ASP203
|
4.5
|
43.2
|
1.0
|
|
C5
|
H:CAP502
|
4.6
|
45.2
|
1.0
|
|
CG
|
H:GLU204
|
4.6
|
39.5
|
1.0
|
|
CB
|
H:GLU204
|
4.7
|
39.6
|
1.0
|
|
CD2
|
H:HIS294
|
4.8
|
47.6
|
1.0
|
|
CE1
|
H:HIS294
|
4.8
|
44.7
|
1.0
|
|
O1
|
H:CAP502
|
4.8
|
50.6
|
1.0
|
|
CG
|
G:ASN123
|
4.8
|
47.3
|
1.0
|
|
C
|
H:ASP203
|
4.9
|
49.3
|
1.0
|
|
CE
|
H:LYS177
|
5.0
|
46.2
|
1.0
|
|
Reference:
R.W.Voland,
R.E.Coleman,
K.M.Lancaster.
The Structure of Mn(II)-Bound Rubisco From Spinacia Oleracea. J.Inorg.Biochem. V. 260 12682 2024.
ISSN: ISSN 0162-0134
PubMed: 39094246
DOI: 10.1016/J.JINORGBIO.2024.112682
Page generated: Sun Feb 9 08:28:48 2025
|
