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Manganese in PDB 3x30: Crystal Structure of Metallo-Beta-Lactamase From Thermotoga Maritima

Protein crystallography data

The structure of Crystal Structure of Metallo-Beta-Lactamase From Thermotoga Maritima, PDB code: 3x30 was solved by H.J.Choi, H.J.Kim, A.Matsuura, B.Mikami, H.J.Yoon, H.H.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.50 / 1.92
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 98.727, 98.727, 45.255, 90.00, 90.00, 120.00
R / Rfree (%) 15.6 / 18.2

Other elements in 3x30:

The structure of Crystal Structure of Metallo-Beta-Lactamase From Thermotoga Maritima also contains other interesting chemical elements:

Nickel (Ni) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Metallo-Beta-Lactamase From Thermotoga Maritima (pdb code 3x30). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Metallo-Beta-Lactamase From Thermotoga Maritima, PDB code: 3x30:

Manganese binding site 1 out of 1 in 3x30

Go back to Manganese Binding Sites List in 3x30
Manganese binding site 1 out of 1 in the Crystal Structure of Metallo-Beta-Lactamase From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Metallo-Beta-Lactamase From Thermotoga Maritima within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn301

b:24.8
occ:1.00
OD2 A:ASP141 2.1 16.0 1.0
NE2 A:HIS53 2.2 17.7 1.0
O A:HOH524 2.2 18.7 1.0
NE2 A:HIS190 2.3 23.8 1.0
OD2 A:ASP52 2.4 21.3 1.0
O A:HOH557 2.4 19.3 1.0
CG A:ASP141 2.9 17.8 1.0
OD1 A:ASP141 2.9 18.3 1.0
CD2 A:HIS53 3.0 14.7 1.0
CE1 A:HIS190 3.2 22.1 1.0
CD2 A:HIS190 3.2 25.6 1.0
CE1 A:HIS53 3.3 15.6 1.0
CG A:ASP52 3.3 21.4 1.0
NI A:NI302 3.4 17.0 1.0
O A:HOH525 3.6 17.8 1.0
OD1 A:ASP52 3.6 20.4 1.0
NE2 A:HIS8 3.8 20.8 1.0
O A:HOH468 3.9 37.0 1.0
CG A:HIS53 4.2 16.4 1.0
ND1 A:HIS53 4.3 15.2 1.0
ND1 A:HIS190 4.3 23.3 1.0
NE2 A:HIS48 4.3 14.2 1.0
CB A:ASP141 4.3 15.2 1.0
CG A:HIS190 4.4 24.6 1.0
CE1 A:HIS48 4.4 17.7 1.0
CE1 A:HIS8 4.5 24.2 1.0
CB A:ASP52 4.7 18.6 1.0
O A:HOH556 4.7 31.4 1.0
CD2 A:HIS8 4.7 17.3 1.0

Reference:

H.J.Choi, H.J.Kim, A.Matsuura, B.Mikami, H.J.Yoon, H.H.Lee. Crystal Structure of Metallo-Beta-Lactamase From Thermotoga Maritima To Be Published.
Page generated: Sat Oct 5 18:37:53 2024

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