Manganese in PDB 2irx: Crystal Structure of the Polymerase Domain From Mycobacterium Tuberculosis Ligase D with Gtp and Manganese.

The structure of Crystal Structure of the Polymerase Domain From Mycobacterium Tuberculosis Ligase D with Gtp and Manganese., PDB code: 2irx was solved by N.C.Brissett, R.S.Pitcher, A.J.Doherty, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.79 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	42.557, 75.532, 89.518, 90.00, 90.00, 90.00
R / Rfree (%)	16.4 / 20.9

The binding sites of Manganese atom in the Crystal Structure of the Polymerase Domain From Mycobacterium Tuberculosis Ligase D with Gtp and Manganese. (pdb code 2irx). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of the Polymerase Domain From Mycobacterium Tuberculosis Ligase D with Gtp and Manganese., PDB code: 2irx:

Manganese binding site 1 out of 1 in the Crystal Structure of the Polymerase Domain From Mycobacterium Tuberculosis Ligase D with Gtp and Manganese.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Polymerase Domain From Mycobacterium Tuberculosis Ligase D with Gtp and Manganese. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn304 b:16.6 occ:1.00 OD1 A:ASP142 2.2 6.8 1.0 O A:HOH583 2.2 15.8 1.0 O2G A:GTP305 2.2 12.8 1.0 OD1 A:ASP140 2.2 8.2 1.0 O1B A:GTP305 2.3 13.0 1.0 O A:HOH584 2.5 15.7 1.0 CG A:ASP140 3.0 8.6 1.0 OD2 A:ASP140 3.1 9.4 1.0 CG A:ASP142 3.2 8.6 1.0 PG A:GTP305 3.3 15.2 1.0 PB A:GTP305 3.3 14.2 1.0 OD2 A:ASP142 3.5 10.8 1.0 O1G A:GTP305 3.6 15.1 1.0 O3B A:GTP305 3.6 15.6 1.0 O3A A:GTP305 3.7 15.7 1.0 NE2 A:HIS181 4.0 12.2 1.0 O A:HOH593 4.1 26.4 1.0 O A:HOH580 4.4 12.9 1.0 O A:LEU141 4.4 5.8 1.0 CB A:ASP140 4.5 7.6 1.0 CB A:ASP142 4.5 7.4 1.0 O A:HOH585 4.5 27.9 1.0 CD2 A:HIS181 4.6 12.8 1.0 O3G A:GTP305 4.6 16.0 1.0 O2B A:GTP305 4.6 12.2 1.0 C A:LEU141 4.6 6.5 1.0 O A:HOH606 4.7 23.2 1.0 CA A:ASP142 4.7 6.8 1.0 N A:ASP142 4.8 6.3 1.0 C A:ASP140 4.8 7.4 1.0 N A:LEU141 4.9 6.9 1.0 CA A:ASP140 5.0 7.3 1.0

R.S.Pitcher, N.C.Brissett, A.J.Picher, P.Andrade, R.Juarez, D.Thompson, G.C.Fox, L.Blanco, A.J.Doherty. Structure and Function of A Mycobacterial Nhej Dna Repair Polymerase. J.Mol.Biol. V. 366 391 2007.
ISSN: ISSN 0022-2836
PubMed: 17174332
DOI: 10.1016/J.JMB.2006.10.046