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Manganese in PDB 2i7z: Gaaa Tetraloop Receptor Complex with Associated Manganese Ions.

Manganese Binding Sites:

The binding sites of Manganese atom in the Gaaa Tetraloop Receptor Complex with Associated Manganese Ions. (pdb code 2i7z). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 10 binding sites of Manganese where determined in the Gaaa Tetraloop Receptor Complex with Associated Manganese Ions., PDB code: 2i7z:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Manganese binding site 1 out of 10 in 2i7z

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Manganese binding site 1 out of 10 in the Gaaa Tetraloop Receptor Complex with Associated Manganese Ions.


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Gaaa Tetraloop Receptor Complex with Associated Manganese Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn101

b:20.0
occ:1.00
 O A:HOH111 1.9 20.0 1.0
O A:HOH109 2.0 20.0 1.0
O A:HOH107 2.0 20.0 1.0
O A:HOH108 2.0 20.0 1.0
O A:HOH110 2.1 20.0 1.0
O A:HOH106 2.1 20.0 1.0
H2 A:HOH111 2.4 0.0 1.0
H1 A:HOH111 2.4 0.0 1.0
H1 A:HOH109 2.4 0.0 1.0
H2 A:HOH109 2.4 0.0 1.0
H1 A:HOH107 2.5 0.0 1.0
H2 A:HOH107 2.5 0.0 1.0
H2 A:HOH108 2.5 0.0 1.0
H1 A:HOH108 2.5 0.0 1.0
H2 A:HOH110 2.6 0.0 1.0
H1 A:HOH110 2.6 0.0 1.0
H1 A:HOH106 2.6 0.0 1.0
H2 A:HOH106 2.6 0.0 1.0
O6 A:G2 3.6 0.0 1.0
H41 A:C42 3.9 0.0 1.0
N7 A:G2 4.2 0.0 1.0
O4 A:U43 4.4 0.0 1.0
O6 A:G1 4.4 0.0 1.0
N7 A:G1 4.4 0.0 1.0
C6 A:G2 4.5 0.0 1.0
H42 A:C42 4.6 0.0 1.0
N4 A:C42 4.6 0.0 1.0
C5 A:G2 4.8 0.0 1.0
H3 A:U43 4.8 0.0 1.0
C6 A:G1 4.9 0.0 1.0
C5 A:G1 4.9 0.0 1.0

Manganese binding site 2 out of 10 in 2i7z

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Manganese binding site 2 out of 10 in the Gaaa Tetraloop Receptor Complex with Associated Manganese Ions.


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Gaaa Tetraloop Receptor Complex with Associated Manganese Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn102

b:20.0
occ:1.00
 O A:HOH117 1.9 20.0 1.0
O A:HOH115 2.0 20.0 1.0
O A:HOH113 2.0 20.0 1.0
O A:HOH114 2.0 20.0 1.0
O A:HOH116 2.1 20.0 1.0
O A:HOH112 2.1 20.0 1.0
H1 A:HOH117 2.4 0.0 1.0
H2 A:HOH117 2.4 0.0 1.0
H2 A:HOH115 2.4 0.0 1.0
H1 A:HOH115 2.4 0.0 1.0
H1 A:HOH113 2.5 0.0 1.0
H2 A:HOH113 2.5 0.0 1.0
H2 A:HOH114 2.5 0.0 1.0
H1 A:HOH114 2.5 0.0 1.0
H2 A:HOH116 2.6 0.0 1.0
H1 A:HOH116 2.6 0.0 1.0
H2 A:HOH112 2.6 0.0 1.0
H1 A:HOH112 2.6 0.0 1.0
H5 A:U5 4.9 0.0 1.0

Manganese binding site 3 out of 10 in 2i7z

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Manganese binding site 3 out of 10 in the Gaaa Tetraloop Receptor Complex with Associated Manganese Ions.


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Gaaa Tetraloop Receptor Complex with Associated Manganese Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn103

b:20.0
occ:1.00
 O A:HOH123 1.9 20.0 1.0
O A:HOH121 2.0 20.0 1.0
O A:HOH119 2.0 20.0 1.0
O A:HOH120 2.0 20.0 1.0
O A:HOH122 2.1 20.0 1.0
O A:HOH118 2.1 20.0 1.0
H1 A:HOH123 2.4 0.0 1.0
H2 A:HOH123 2.4 0.0 1.0
H2 A:HOH121 2.4 0.0 1.0
H1 A:HOH121 2.4 0.0 1.0
H2 A:HOH119 2.5 0.0 1.0
H1 A:HOH119 2.5 0.0 1.0
H2 A:HOH120 2.5 0.0 1.0
H1 A:HOH120 2.5 0.0 1.0
H1 A:HOH122 2.6 0.0 1.0
H2 A:HOH122 2.6 0.0 1.0
H1 A:HOH118 2.6 0.0 1.0
H2 A:HOH118 2.6 0.0 1.0
H62 A:A10 3.8 0.0 1.0
N7 A:G9 4.4 0.0 1.0
N6 A:A10 4.8 0.0 1.0
OP2 A:U7 4.8 0.0 1.0

Manganese binding site 4 out of 10 in 2i7z

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Manganese binding site 4 out of 10 in the Gaaa Tetraloop Receptor Complex with Associated Manganese Ions.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Gaaa Tetraloop Receptor Complex with Associated Manganese Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn104

b:20.0
occ:1.00
 O A:HOH129 1.9 20.0 1.0
O A:HOH127 2.0 20.0 1.0
O A:HOH125 2.0 20.0 1.0
O A:HOH126 2.0 20.0 1.0
O A:HOH128 2.1 20.0 1.0
O A:HOH124 2.1 20.0 1.0
H1 A:HOH129 2.4 0.0 1.0
H2 A:HOH129 2.4 0.0 1.0
H2 A:HOH127 2.4 0.0 1.0
H1 A:HOH127 2.4 0.0 1.0
H2 A:HOH125 2.5 0.0 1.0
H1 A:HOH125 2.5 0.0 1.0
H1 A:HOH126 2.5 0.0 1.0
H2 A:HOH126 2.5 0.0 1.0
H1 A:HOH128 2.6 0.0 1.0
H2 A:HOH128 2.6 0.0 1.0
H2 A:HOH124 2.6 0.0 1.0
H1 A:HOH124 2.6 0.0 1.0
H62 A:A13 3.3 0.0 1.0
N6 A:A13 4.0 0.0 1.0
H61 A:A14 4.0 0.0 1.0
O4 A:U29 4.1 0.0 1.0
H62 A:A14 4.1 0.0 1.0
H61 A:A13 4.1 0.0 1.0
N6 A:A14 4.5 0.0 1.0
O6 A:G28 4.9 0.0 1.0

Manganese binding site 5 out of 10 in 2i7z

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Manganese binding site 5 out of 10 in the Gaaa Tetraloop Receptor Complex with Associated Manganese Ions.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Gaaa Tetraloop Receptor Complex with Associated Manganese Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn105

b:20.0
occ:1.00
 O A:HOH135 1.9 20.0 1.0
O A:HOH133 2.0 20.0 1.0
O A:HOH131 2.0 20.0 1.0
O A:HOH132 2.0 20.0 1.0
O A:HOH134 2.1 20.0 1.0
O A:HOH130 2.1 20.0 1.0
H2 A:HOH135 2.4 0.0 1.0
H1 A:HOH135 2.4 0.0 1.0
H2 A:HOH133 2.4 0.0 1.0
H1 A:HOH133 2.4 0.0 1.0
H2 A:HOH131 2.5 0.0 1.0
H1 A:HOH131 2.5 0.0 1.0
H2 A:HOH132 2.5 0.0 1.0
H1 A:HOH132 2.5 0.0 1.0
H2 A:HOH134 2.6 0.0 1.0
H1 A:HOH134 2.6 0.0 1.0
H2 A:HOH130 2.6 0.0 1.0
H1 A:HOH130 2.6 0.0 1.0
N7 A:G19 3.4 0.0 1.0
N7 A:G18 3.7 0.0 1.0
O6 A:G20 3.8 0.0 1.0
C8 A:G18 3.9 0.0 1.0
H8 A:G18 3.9 0.0 1.0
H8 A:G19 4.1 0.0 1.0
C8 A:G19 4.2 0.0 1.0
H3' A:G18 4.4 0.0 1.0
C5 A:G18 4.4 0.0 1.0
C5 A:G19 4.4 0.0 1.0
O6 A:G19 4.4 0.0 1.0
H2' A:G18 4.6 0.0 1.0
C6 A:G20 4.6 0.0 1.0
N9 A:G18 4.6 0.0 1.0
N7 A:G20 4.7 0.0 1.0
OP2 A:G18 4.8 0.0 1.0
C6 A:G19 4.8 0.0 1.0
H3' A:G17 4.9 0.0 1.0
C4 A:G18 4.9 0.0 1.0
O5' A:G18 5.0 0.0 1.0
C5 A:G20 5.0 0.0 1.0

Manganese binding site 6 out of 10 in 2i7z

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Manganese binding site 6 out of 10 in the Gaaa Tetraloop Receptor Complex with Associated Manganese Ions.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Gaaa Tetraloop Receptor Complex with Associated Manganese Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn106

b:20.0
occ:1.00
 O B:HOH116 1.9 20.0 1.0
O B:HOH114 2.0 20.0 1.0
O B:HOH112 2.0 20.0 1.0
O B:HOH113 2.0 20.0 1.0
O B:HOH115 2.1 20.0 1.0
O B:HOH111 2.1 20.0 1.0
H1 B:HOH116 2.4 0.0 1.0
H2 B:HOH116 2.4 0.0 1.0
H1 B:HOH114 2.4 0.0 1.0
H2 B:HOH114 2.4 0.0 1.0
H2 B:HOH112 2.5 0.0 1.0
H1 B:HOH112 2.5 0.0 1.0
H2 B:HOH113 2.5 0.0 1.0
H1 B:HOH113 2.5 0.0 1.0
H2 B:HOH115 2.6 0.0 1.0
H1 B:HOH115 2.6 0.0 1.0
H2 B:HOH111 2.6 0.0 1.0
H1 B:HOH111 2.6 0.0 1.0
O6 B:G45 3.3 0.0 1.0
H41 B:C85 3.6 0.0 1.0
N7 B:G45 3.8 0.0 1.0
C6 B:G45 4.1 0.0 1.0
C5 B:G45 4.4 0.0 1.0
N4 B:C85 4.4 0.0 1.0
O4 B:U86 4.4 0.0 1.0
H42 B:C85 4.5 0.0 1.0
O6 B:G46 4.9 0.0 1.0
O6 B:G44 4.9 0.0 1.0
H42 B:C84 5.0 0.0 1.0
H3 B:U86 5.0 0.0 1.0
N7 B:G44 5.0 0.0 1.0

Manganese binding site 7 out of 10 in 2i7z

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Manganese binding site 7 out of 10 in the Gaaa Tetraloop Receptor Complex with Associated Manganese Ions.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Gaaa Tetraloop Receptor Complex with Associated Manganese Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn107

b:20.0
occ:1.00
 O B:HOH122 1.9 20.0 1.0
O B:HOH120 2.0 20.0 1.0
O B:HOH118 2.0 20.0 1.0
O B:HOH119 2.0 20.0 1.0
O B:HOH121 2.1 20.0 1.0
O B:HOH117 2.1 20.0 1.0
H2 B:HOH122 2.4 0.0 1.0
H1 B:HOH122 2.4 0.0 1.0
H2 B:HOH120 2.4 0.0 1.0
H1 B:HOH120 2.4 0.0 1.0
H1 B:HOH118 2.5 0.0 1.0
H2 B:HOH118 2.5 0.0 1.0
H1 B:HOH119 2.5 0.0 1.0
H2 B:HOH119 2.5 0.0 1.0
H2 B:HOH121 2.6 0.0 1.0
H1 B:HOH121 2.6 0.0 1.0
H2 B:HOH117 2.6 0.0 1.0
H1 B:HOH117 2.6 0.0 1.0
O4 B:U48 4.3 0.0 1.0
H5 B:U48 4.7 0.0 1.0

Manganese binding site 8 out of 10 in 2i7z

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Manganese binding site 8 out of 10 in the Gaaa Tetraloop Receptor Complex with Associated Manganese Ions.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Gaaa Tetraloop Receptor Complex with Associated Manganese Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn108

b:20.0
occ:1.00
 O B:HOH128 1.9 20.0 1.0
O B:HOH126 2.0 20.0 1.0
O B:HOH124 2.0 20.0 1.0
O B:HOH125 2.0 20.0 1.0
O B:HOH127 2.1 20.0 1.0
O B:HOH123 2.1 20.0 1.0
H2 B:HOH128 2.4 0.0 1.0
H1 B:HOH128 2.4 0.0 1.0
H2 B:HOH126 2.4 0.0 1.0
H1 B:HOH126 2.4 0.0 1.0
H2 B:HOH124 2.5 0.0 1.0
H1 B:HOH124 2.5 0.0 1.0
H2 B:HOH125 2.5 0.0 1.0
H1 B:HOH125 2.5 0.0 1.0
H2 B:HOH127 2.6 0.0 1.0
H1 B:HOH127 2.6 0.0 1.0
H2 B:HOH123 2.6 0.0 1.0
H1 B:HOH123 2.6 0.0 1.0
O6 B:G52 4.1 0.0 1.0
N7 B:G52 4.2 0.0 1.0
H62 B:A53 4.4 0.0 1.0
OP2 B:G51 4.6 0.0 1.0
HO2' B:A49 4.7 0.0 1.0
C6 B:G52 4.8 0.0 1.0
H3' B:U50 4.8 0.0 1.0
C5 B:G52 4.8 0.0 1.0
H5'' B:U50 4.9 0.0 1.0
OP2 B:U50 4.9 0.0 1.0

Manganese binding site 9 out of 10 in 2i7z

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Manganese binding site 9 out of 10 in the Gaaa Tetraloop Receptor Complex with Associated Manganese Ions.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 9 of Gaaa Tetraloop Receptor Complex with Associated Manganese Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn109

b:20.0
occ:1.00
 O B:HOH134 1.9 20.0 1.0
O B:HOH132 2.0 20.0 1.0
O B:HOH130 2.0 20.0 1.0
O B:HOH131 2.0 20.0 1.0
O B:HOH133 2.1 20.0 1.0
O B:HOH129 2.1 20.0 1.0
H2 B:HOH134 2.4 0.0 1.0
H1 B:HOH134 2.4 0.0 1.0
H2 B:HOH132 2.4 0.0 1.0
H1 B:HOH132 2.4 0.0 1.0
H1 B:HOH130 2.5 0.0 1.0
H2 B:HOH130 2.5 0.0 1.0
H1 B:HOH131 2.5 0.0 1.0
H2 B:HOH131 2.5 0.0 1.0
H2 B:HOH133 2.6 0.0 1.0
H1 B:HOH133 2.6 0.0 1.0
H1 B:HOH129 2.6 0.0 1.0
H2 B:HOH129 2.6 0.0 1.0
H62 B:A56 3.7 0.0 1.0
N6 B:A56 4.5 0.0 1.0
H62 B:A57 4.7 0.0 1.0
H61 B:A56 4.7 0.0 1.0
H61 B:A57 4.8 0.0 1.0
O6 B:G71 4.8 0.0 1.0

Manganese binding site 10 out of 10 in 2i7z

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Manganese binding site 10 out of 10 in the Gaaa Tetraloop Receptor Complex with Associated Manganese Ions.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 10 of Gaaa Tetraloop Receptor Complex with Associated Manganese Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn110

b:20.0
occ:1.00
 O B:HOH140 1.9 20.0 1.0
O B:HOH138 2.0 20.0 1.0
O B:HOH136 2.0 20.0 1.0
O B:HOH137 2.0 20.0 1.0
O B:HOH139 2.1 20.0 1.0
O B:HOH135 2.1 20.0 1.0
H1 B:HOH140 2.4 0.0 1.0
H2 B:HOH140 2.4 0.0 1.0
H2 B:HOH138 2.4 0.0 1.0
H1 B:HOH138 2.4 0.0 1.0
H2 B:HOH136 2.5 0.0 1.0
H1 B:HOH136 2.5 0.0 1.0
H2 B:HOH137 2.5 0.0 1.0
H1 B:HOH137 2.5 0.0 1.0
H2 B:HOH139 2.6 0.0 1.0
H1 B:HOH139 2.6 0.0 1.0
H2 B:HOH135 2.6 0.0 1.0
H1 B:HOH135 2.6 0.0 1.0
N7 B:G62 3.4 0.0 1.0
N7 B:G61 3.5 0.0 1.0
O6 B:G63 3.7 0.0 1.0
H8 B:G61 3.9 0.0 1.0
C8 B:G61 3.9 0.0 1.0
O6 B:G62 4.1 0.0 1.0
C5 B:G61 4.3 0.0 1.0
C8 B:G62 4.3 0.0 1.0
C5 B:G62 4.4 0.0 1.0
H8 B:G62 4.4 0.0 1.0
C6 B:G63 4.4 0.0 1.0
C6 B:G62 4.6 0.0 1.0
N7 B:G63 4.6 0.0 1.0
C5 B:G63 4.8 0.0 1.0
O6 B:G61 4.9 0.0 1.0
N9 B:G61 4.9 0.0 1.0
C6 B:G61 4.9 0.0 1.0

Reference:

J.H.Davis, T.R.Foster, M.Tonelli, S.E.Butcher. Role of Metal Ions in the Tetraloop-Receptor Complex As Analyzed By uc(Nmr). Rna V. 13 76 2007.
ISSN: ISSN 1355-8382
PubMed: 17119098
DOI: 10.1261/RNA.268307
Page generated: Sat Oct 5 14:26:28 2024

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