Manganese in PDB 7rpx: Archaeal Dna Ligase and Heterotrimeric Pcna in Complex with End-Joined Dna

All present enzymatic activity of Archaeal Dna Ligase and Heterotrimeric Pcna in Complex with End-Joined Dna:
6.5.1.1;

The binding sites of Manganese atom in the Archaeal Dna Ligase and Heterotrimeric Pcna in Complex with End-Joined Dna (pdb code 7rpx). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 3 binding sites of Manganese where determined in the Archaeal Dna Ligase and Heterotrimeric Pcna in Complex with End-Joined Dna, PDB code: 7rpx:
Jump to Manganese binding site number: 1; 2; 3;

Manganese binding site 1 out of 3 in the Archaeal Dna Ligase and Heterotrimeric Pcna in Complex with End-Joined Dna


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Archaeal Dna Ligase and Heterotrimeric Pcna in Complex with End-Joined Dna within 5.0Å range: probe atom residue distance (Å) B Occ X:Mn101 b:94.7 occ:1.00 OP1 X:DG22 1.8 106.4 1.0 OP2 X:DG22 2.2 106.4 1.0 P X:DG22 2.2 106.4 1.0 O5' X:DG22 3.1 106.4 1.0 O3' X:DC21 3.6 101.3 1.0 OE2 E:GLU58 3.7 83.4 1.0 CD E:GLU58 3.9 83.4 1.0 OD2 E:ASP52 3.9 69.0 1.0 OE1 E:GLU58 3.9 83.4 1.0 C5' X:DG22 4.2 106.4 1.0 C3' X:DC21 4.5 101.3 1.0 OE1 E:GLU283 4.7 88.6 1.0 CG E:GLU58 4.7 83.4 1.0 CG E:ASP52 4.9 69.0 1.0

Manganese binding site 2 out of 3 in the Archaeal Dna Ligase and Heterotrimeric Pcna in Complex with End-Joined Dna


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Archaeal Dna Ligase and Heterotrimeric Pcna in Complex with End-Joined Dna within 5.0Å range: probe atom residue distance (Å) B Occ E:Mn701 b:83.0 occ:1.00 O E:GLY60 1.7 80.9 1.0 N E:GLY62 1.9 87.1 1.0 C E:ILE61 1.9 81.5 1.0 C E:GLY60 1.9 80.9 1.0 N E:ILE61 2.3 81.5 1.0 CA E:ILE61 2.4 81.5 1.0 O E:ILE61 2.7 81.5 1.0 CA E:GLY62 2.8 87.1 1.0 C5' X:DG20 3.0 86.5 1.0 CA E:GLY60 3.1 80.9 1.0 O3' X:DG20 3.2 86.5 1.0 C4' X:DG20 3.2 86.5 1.0 C3' X:DG20 3.5 86.5 1.0 CB E:ILE61 3.9 81.5 1.0 O E:LEU59 3.9 73.4 1.0 O5' X:DG20 4.0 86.5 1.0 N E:GLY60 4.0 80.9 1.0 OP1 X:DC21 4.1 101.3 1.0 OP1 X:DG20 4.2 86.5 1.0 C E:GLY62 4.2 87.1 1.0 P X:DC21 4.3 101.3 1.0 C E:LEU59 4.3 73.4 1.0 CG2 E:ILE61 4.6 81.5 1.0 O4' X:DG20 4.7 86.5 1.0 P X:DG20 4.8 86.5 1.0 CG1 E:ILE61 4.8 81.5 1.0 O E:GLY62 4.8 87.1 1.0 OP2 X:DC21 4.9 101.3 1.0 C2' X:DG20 5.0 86.5 1.0

Manganese binding site 3 out of 3 in the Archaeal Dna Ligase and Heterotrimeric Pcna in Complex with End-Joined Dna


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Archaeal Dna Ligase and Heterotrimeric Pcna in Complex with End-Joined Dna within 5.0Å range: probe atom residue distance (Å) B Occ E:Mn702 b:96.7 occ:1.00 O E:GLU167 1.8 86.3 1.0 C E:GLU167 2.8 86.3 1.0 CA E:GLU167 3.6 86.3 1.0 O E:VAL166 3.6 81.9 1.0 OP2 X:DC21 3.7 101.3 1.0 N E:GLY168 3.8 87.0 1.0 CA E:GLY168 4.1 87.0 1.0 OP1 X:DC21 4.3 101.3 1.0 C E:VAL166 4.5 81.9 1.0 P X:DC21 4.5 101.3 1.0 N E:GLU167 4.6 86.3 1.0 CB E:GLU167 4.7 86.3 1.0

A.Sverzhinsky, A.E.Tomkinson, J.M.Pascal. Cryo-Em Structures and Biochemical Insights Into Heterotrimeric Pcna Regulation of Dna Ligase To Be Published.