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Manganese in PDB 7lez: Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex

Enzymatic activity of Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex

All present enzymatic activity of Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex:
3.5.3.1;

Manganese Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Manganese atom in the Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex (pdb code 7lez). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 12 binding sites of Manganese where determined in the Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex, PDB code: 7lez:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Manganese binding site 1 out of 12 in 7lez

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Manganese binding site 1 out of 12 in the Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1001

b:12.2
occ:1.00
 ND1 A:HIS101 1.3 52.0 1.0
CE1 A:HIS101 1.4 52.0 1.0
OD2 A:ASP128 2.1 49.4 1.0
OD2 A:ASP124 2.3 50.3 1.0
CG A:HIS101 2.6 52.0 1.0
NE2 A:HIS101 2.7 52.0 1.0
OD2 A:ASP232 3.0 92.6 1.0
CG A:ASP124 3.0 50.3 1.0
CD2 A:HIS101 3.2 52.0 1.0
CG A:ASP128 3.3 49.4 1.0
MN A:MN1002 3.5 16.2 1.0
OD1 A:ASP124 3.5 50.3 1.0
CZ2 A:TRP122 3.7 124.8 1.0
CB A:HIS101 3.7 52.0 1.0
CG A:ASP232 3.9 92.6 1.0
OD1 A:ASP128 4.0 49.4 1.0
CB A:ASP124 4.1 50.3 1.0
CB A:ASP232 4.1 92.6 1.0
NE1 A:TRP122 4.2 124.8 1.0
CE2 A:TRP122 4.2 124.8 1.0
O A:HIS141 4.3 49.4 1.0
CB A:ASP128 4.4 49.4 1.0
CH2 A:TRP122 4.6 124.8 1.0
CG A:GLU277 4.8 59.8 1.0
OD1 A:ASP232 4.9 92.6 1.0

Manganese binding site 2 out of 12 in 7lez

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Manganese binding site 2 out of 12 in the Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1002

b:16.2
occ:1.00
 OD1 A:ASP124 1.9 50.3 1.0
OD2 A:ASP232 2.4 92.6 1.0
OD1 A:ASP234 2.4 124.8 1.0
ND1 A:HIS126 2.6 49.2 1.0
OD2 A:ASP234 2.6 124.8 1.0
CG A:ASP124 2.8 50.3 1.0
CG A:ASP234 2.9 124.8 1.0
OD2 A:ASP124 3.1 50.3 1.0
CE1 A:HIS126 3.2 49.2 1.0
CG A:ASP232 3.4 92.6 1.0
MN A:MN1001 3.5 12.2 1.0
CG A:HIS126 3.7 49.2 1.0
N A:ALA125 3.9 53.3 1.0
N A:HIS126 4.0 49.2 1.0
OG1 A:THR246 4.0 42.7 1.0
CB A:ALA125 4.1 53.3 1.0
CB A:HIS126 4.2 49.2 1.0
CB A:ASP232 4.2 92.6 1.0
CB A:ASP124 4.2 50.3 1.0
OD1 A:ASP232 4.3 92.6 1.0
CE1 A:HIS101 4.3 52.0 1.0
CB A:ASP234 4.4 124.8 1.0
CA A:ALA125 4.5 53.3 1.0
NE2 A:HIS126 4.5 49.2 1.0
OD2 A:ASP128 4.5 49.4 1.0
ND1 A:HIS101 4.7 52.0 1.0
C A:ALA125 4.7 53.3 1.0
CA A:ASP124 4.7 50.3 1.0
CA A:HIS126 4.7 49.2 1.0
CD2 A:HIS126 4.7 49.2 1.0
C A:ASP124 4.7 50.3 1.0
OD1 A:ASP128 4.9 49.4 1.0

Manganese binding site 3 out of 12 in 7lez

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Manganese binding site 3 out of 12 in the Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn1001

b:12.2
occ:1.00
 ND1 B:HIS101 1.4 54.6 1.0
CE1 B:HIS101 1.7 54.6 1.0
OD2 B:ASP128 1.9 55.1 1.0
OD2 B:ASP124 2.3 35.6 1.0
CG B:HIS101 2.8 54.6 1.0
NE2 B:HIS101 3.0 54.6 1.0
CG B:ASP128 3.0 55.1 1.0
OD2 B:ASP232 3.1 37.0 1.0
CG B:ASP124 3.1 35.6 1.0
CD2 B:HIS101 3.5 54.6 1.0
MN B:MN1002 3.5 16.2 1.0
OD1 B:ASP124 3.5 35.6 1.0
OD1 B:ASP128 3.7 55.1 1.0
CB B:HIS101 3.7 54.6 1.0
CZ2 B:TRP122 3.9 38.7 1.0
CG B:ASP232 4.0 37.0 1.0
O B:HIS141 4.0 58.4 1.0
CB B:ASP128 4.2 55.1 1.0
CB B:ASP124 4.2 35.6 1.0
CB B:ASP232 4.4 37.0 1.0
NE1 B:TRP122 4.4 38.7 1.0
CE2 B:TRP122 4.4 38.7 1.0
CG B:GLU277 4.8 60.9 1.0
CH2 B:TRP122 4.8 38.7 1.0

Manganese binding site 4 out of 12 in 7lez

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Manganese binding site 4 out of 12 in the Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn1002

b:16.2
occ:1.00
 OD1 B:ASP124 2.2 35.6 1.0
ND1 B:HIS126 2.2 38.2 1.0
OD2 B:ASP234 2.6 37.6 1.0
OD1 B:ASP234 2.6 37.6 1.0
OD2 B:ASP232 2.7 37.0 1.0
CE1 B:HIS126 2.9 38.2 1.0
CG B:ASP234 3.0 37.6 1.0
CG B:ASP124 3.1 35.6 1.0
OD2 B:ASP124 3.3 35.6 1.0
CG B:HIS126 3.5 38.2 1.0
MN B:MN1001 3.5 12.2 1.0
OG1 B:THR246 3.7 36.0 1.0
CG B:ASP232 3.8 37.0 1.0
N B:HIS126 4.0 38.2 1.0
CB B:HIS126 4.0 38.2 1.0
CB B:ALA125 4.1 36.8 1.0
N B:ALA125 4.1 36.8 1.0
NE2 B:HIS126 4.1 38.2 1.0
CD2 B:HIS126 4.4 38.2 1.0
CB B:ASP234 4.5 37.6 1.0
CA B:ALA125 4.5 36.8 1.0
CB B:ASP124 4.5 35.6 1.0
CE1 B:HIS101 4.6 54.6 1.0
OD2 B:ASP128 4.6 55.1 1.0
OD1 B:ASP232 4.6 37.0 1.0
CA B:HIS126 4.6 38.2 1.0
CB B:ASP232 4.6 37.0 1.0
C B:ALA125 4.7 36.8 1.0
OD1 B:ASP128 4.8 55.1 1.0
ND1 B:HIS101 4.8 54.6 1.0
O B:THR246 5.0 36.0 1.0
C B:ASP124 5.0 35.6 1.0

Manganese binding site 5 out of 12 in 7lez

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Manganese binding site 5 out of 12 in the Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn1001

b:12.2
occ:1.00
 CE1 C:HIS101 1.6 75.7 1.0
ND1 C:HIS101 1.6 75.7 1.0
OD2 C:ASP124 2.2 32.2 1.0
OD2 C:ASP128 2.2 80.9 1.0
OD2 C:ASP232 2.7 54.2 1.0
CG C:ASP124 2.8 32.2 1.0
NE2 C:HIS101 2.9 75.7 1.0
CG C:HIS101 3.0 75.7 1.0
OD1 C:ASP124 3.2 32.2 1.0
CG C:ASP128 3.4 80.9 1.0
MN C:MN1002 3.5 16.2 1.0
CD2 C:HIS101 3.5 75.7 1.0
CG C:ASP232 3.6 54.2 1.0
OD1 C:ASP128 3.9 80.9 1.0
CB C:ASP124 3.9 32.2 1.0
CB C:ASP232 4.0 54.2 1.0
CZ2 C:TRP122 4.0 50.9 1.0
CB C:HIS101 4.0 75.7 1.0
NE1 C:TRP122 4.4 50.9 1.0
O C:HIS141 4.4 83.9 1.0
CE2 C:TRP122 4.5 50.9 1.0
CB C:ASP128 4.5 80.9 1.0
OD1 C:ASP232 4.7 54.2 1.0
CG C:GLU277 4.7 76.9 1.0
OD1 C:ASP234 4.9 56.9 1.0
ND1 C:HIS126 4.9 75.9 1.0
CH2 C:TRP122 5.0 50.9 1.0

Manganese binding site 6 out of 12 in 7lez

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Manganese binding site 6 out of 12 in the Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn1002

b:16.2
occ:1.00
 OD1 C:ASP124 2.0 32.2 1.0
OD1 C:ASP234 2.2 56.9 1.0
OD2 C:ASP234 2.4 56.9 1.0
ND1 C:HIS126 2.4 75.9 1.0
CG C:ASP234 2.6 56.9 1.0
OD2 C:ASP232 2.6 54.2 1.0
CE1 C:HIS126 2.9 75.9 1.0
CG C:ASP124 3.1 32.2 1.0
OD2 C:ASP124 3.4 32.2 1.0
MN C:MN1001 3.5 12.2 1.0
CG C:HIS126 3.6 75.9 1.0
CG C:ASP232 3.6 54.2 1.0
CB C:ALA125 3.8 81.3 1.0
N C:ALA125 3.8 81.3 1.0
OG1 C:THR246 3.8 80.9 1.0
N C:HIS126 3.9 75.9 1.0
CB C:ASP234 4.2 56.9 1.0
NE2 C:HIS126 4.2 75.9 1.0
CB C:HIS126 4.2 75.9 1.0
CA C:ALA125 4.2 81.3 1.0
OD1 C:ASP232 4.4 54.2 1.0
CB C:ASP232 4.4 54.2 1.0
CB C:ASP124 4.4 32.2 1.0
C C:ALA125 4.5 81.3 1.0
CD2 C:HIS126 4.5 75.9 1.0
CE1 C:HIS101 4.7 75.7 1.0
CA C:HIS126 4.7 75.9 1.0
C C:ASP124 4.7 32.2 1.0
CA C:ASP124 4.8 32.2 1.0
O C:THR246 4.8 80.9 1.0
OD2 C:ASP128 4.9 80.9 1.0

Manganese binding site 7 out of 12 in 7lez

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Manganese binding site 7 out of 12 in the Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mn1001

b:12.2
occ:1.00
 ND1 M:HIS101 1.3 385.2 1.0
CE1 M:HIS101 1.4 385.2 1.0
OD2 M:ASP128 2.1 410.4 1.0
OD2 M:ASP124 2.3 391.6 1.0
CG M:HIS101 2.6 385.2 1.0
NE2 M:HIS101 2.7 385.2 1.0
OD2 M:ASP232 3.0 374.2 1.0
CG M:ASP124 3.0 391.6 1.0
CD2 M:HIS101 3.2 385.2 1.0
CG M:ASP128 3.3 410.4 1.0
MN M:MN1002 3.5 16.2 1.0
OD1 M:ASP124 3.5 391.6 1.0
CZ2 M:TRP122 3.7 378.7 1.0
CB M:HIS101 3.7 385.2 1.0
CG M:ASP232 3.9 374.2 1.0
OD1 M:ASP128 4.0 410.4 1.0
CB M:ASP124 4.1 391.6 1.0
CB M:ASP232 4.1 374.2 1.0
NE1 M:TRP122 4.2 378.7 1.0
CE2 M:TRP122 4.2 378.7 1.0
O M:HIS141 4.3 414.1 1.0
CB M:ASP128 4.4 410.4 1.0
CH2 M:TRP122 4.6 378.7 1.0
CG M:GLU277 4.8 372.1 1.0
OD1 M:ASP232 4.9 374.2 1.0

Manganese binding site 8 out of 12 in 7lez

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Manganese binding site 8 out of 12 in the Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mn1002

b:16.2
occ:1.00
 OD1 M:ASP124 1.9 391.6 1.0
OD2 M:ASP232 2.4 374.2 1.0
OD1 M:ASP234 2.4 380.7 1.0
ND1 M:HIS126 2.6 400.9 1.0
OD2 M:ASP234 2.6 380.7 1.0
CG M:ASP124 2.8 391.6 1.0
CG M:ASP234 2.9 380.7 1.0
OD2 M:ASP124 3.1 391.6 1.0
CE1 M:HIS126 3.2 400.9 1.0
CG M:ASP232 3.4 374.2 1.0
MN M:MN1001 3.5 12.2 1.0
CG M:HIS126 3.7 400.9 1.0
N M:ALA125 3.9 404.1 1.0
N M:HIS126 4.0 400.9 1.0
OG1 M:THR246 4.0 393.1 1.0
CB M:ALA125 4.1 404.1 1.0
CB M:HIS126 4.2 400.9 1.0
CB M:ASP232 4.2 374.2 1.0
CB M:ASP124 4.2 391.6 1.0
OD1 M:ASP232 4.3 374.2 1.0
CE1 M:HIS101 4.3 385.2 1.0
CB M:ASP234 4.4 380.7 1.0
CA M:ALA125 4.5 404.1 1.0
NE2 M:HIS126 4.5 400.9 1.0
OD2 M:ASP128 4.5 410.4 1.0
ND1 M:HIS101 4.7 385.2 1.0
C M:ALA125 4.7 404.1 1.0
CA M:ASP124 4.7 391.6 1.0
CA M:HIS126 4.7 400.9 1.0
CD2 M:HIS126 4.7 400.9 1.0
C M:ASP124 4.7 391.6 1.0
OD1 M:ASP128 4.9 410.4 1.0

Manganese binding site 9 out of 12 in 7lez

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Manganese binding site 9 out of 12 in the Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 9 of Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Mn1001

b:12.2
occ:1.00
 ND1 N:HIS101 1.6 442.3 1.0
CE1 N:HIS101 2.1 442.3 1.0
OD2 N:ASP128 2.5 426.8 1.0
CG N:HIS101 2.7 442.3 1.0
OD2 N:ASP232 2.8 457.3 1.0
NE2 N:HIS101 3.2 442.3 1.0
OD2 N:ASP124 3.2 443.4 1.0
CD2 N:HIS101 3.5 442.3 1.0
MN N:MN1002 3.5 16.2 1.0
CB N:HIS101 3.6 442.3 1.0
CG N:ASP128 3.6 426.8 1.0
O N:HIS141 3.7 419.4 1.0
CG N:ASP124 3.8 443.4 1.0
CG N:ASP232 3.8 457.3 1.0
CG N:GLU277 3.9 453.4 1.0
OD1 N:ASP124 4.0 443.4 1.0
OD1 N:ASP128 4.0 426.8 1.0
OE2 N:GLU277 4.1 453.4 1.0
CD N:GLU277 4.3 453.4 1.0
CB N:ASP232 4.5 457.3 1.0
CZ2 N:TRP122 4.6 452.6 1.0
OD1 N:ASP232 4.6 457.3 1.0
ND1 N:HIS141 4.7 419.4 1.0
CA N:HIS101 4.8 442.3 1.0
CB N:ASP128 4.8 426.8 1.0
N N:HIS101 4.9 442.3 1.0
C N:HIS141 4.9 419.4 1.0

Manganese binding site 10 out of 12 in 7lez

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Manganese binding site 10 out of 12 in the Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 10 of Trimeric Human Arginase 1 in Complex with MAB1 - 2 Harg:2 MAB1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Mn1002

b:16.2
occ:1.00
 OD2 N:ASP234 1.9 438.2 1.0
OD1 N:ASP234 2.4 438.2 1.0
CG N:ASP234 2.5 438.2 1.0
OD2 N:ASP232 2.5 457.3 1.0
ND1 N:HIS126 2.8 429.4 1.0
OD1 N:ASP124 2.8 443.4 1.0
CE1 N:HIS126 3.1 429.4 1.0
OG1 N:THR246 3.2 400.4 1.0
MN N:MN1001 3.5 12.2 1.0
CG N:ASP232 3.5 457.3 1.0
CG N:ASP124 3.8 443.4 1.0
CB N:ASP234 3.9 438.2 1.0
OD2 N:ASP124 3.9 443.4 1.0
OD1 N:ASP232 4.1 457.3 1.0
CG N:HIS126 4.1 429.4 1.0
NE2 N:HIS126 4.4 429.4 1.0
O N:THR246 4.5 400.4 1.0
CB N:ALA125 4.5 432.3 1.0
CB N:ASP232 4.6 457.3 1.0
CB N:THR246 4.6 400.4 1.0
N N:ALA125 4.7 432.3 1.0
CE1 N:HIS101 4.7 442.3 1.0
CG N:GLU277 4.8 453.4 1.0
CB N:HIS126 4.8 429.4 1.0
N N:HIS126 4.8 429.4 1.0
CD2 N:HIS126 4.9 429.4 1.0
ND1 N:HIS101 5.0 442.3 1.0
CA N:ASP234 5.0 438.2 1.0

Reference:

R.L.Palte, V.Juan, Y.Gomez-Llorente, M.A.Bailly, K.Chakravarthy, X.Chen, D.Cipriano, L.Fayadat-Dilman, S.Gathiaka, H.Greb, B.Hall, M.Handa, M.Hsieh, E.Kofman, H.Lin, J.R.Miller, N.Nguyen, J.O'neil, H.Shaheen, E.Sterner, C.Strickland, A.Sun, S.Taremi, G.Scapin. Cryo-Em Structures of Inhibitory Antibodies Complexed with Arginase 1 Provide Insight Into Mechanism of Action. Commun Biol V. 4 927 2021.
ISSN: ESSN 2399-3642
PubMed: 34326456
DOI: 10.1038/S42003-021-02444-Z
Page generated: Sun Oct 6 09:51:08 2024

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