Manganese in PDB 5gjc: Zika Virus NS3 Helicase in Complex with Atp

The structure of Zika Virus NS3 Helicase in Complex with Atp, PDB code: 5gjc was solved by H.L.Tian, X.Y.Ji, X.Y.Yang, Z.X.Zhang, Z.K.Lu, K.L.Yang, C.Chen, Q.Zhao, H.Chi, Z.Y.Mu, W.Xie, Z.F.Wang, H.Q.Lou, H.T.Yang, Z.H.Rao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.73 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	51.595, 74.167, 57.740, 90.00, 92.21, 90.00
R / Rfree (%)	19.7 / 24.7

The binding sites of Manganese atom in the Zika Virus NS3 Helicase in Complex with Atp (pdb code 5gjc). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Zika Virus NS3 Helicase in Complex with Atp, PDB code: 5gjc:

Manganese binding site 1 out of 1 in the Zika Virus NS3 Helicase in Complex with Atp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Zika Virus NS3 Helicase in Complex with Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn701 b:61.4 occ:1.00 O2B A:ATP702 1.9 55.5 1.0 O3G A:ATP702 2.0 78.3 1.0 O A:HOH831 2.2 51.3 1.0 OG1 A:THR201 2.3 50.7 1.0 O A:HOH814 2.3 52.6 1.0 OE2 A:GLU286 2.3 55.4 1.0 PB A:ATP702 3.1 50.8 1.0 PG A:ATP702 3.2 81.8 1.0 CB A:THR201 3.3 53.4 1.0 CD A:GLU286 3.3 51.8 1.0 O3B A:ATP702 3.4 78.9 1.0 OE1 A:GLU286 3.7 53.0 1.0 O2G A:ATP702 3.7 73.7 1.0 O2A A:ATP702 3.9 77.3 1.0 O A:HOH834 4.0 44.1 1.0 OD1 A:ASP285 4.0 47.2 1.0 OD2 A:ASP285 4.0 48.9 1.0 N A:THR201 4.1 51.4 1.0 NZ A:LYS200 4.1 58.7 1.0 O1B A:ATP702 4.1 48.9 1.0 O A:HOH856 4.1 45.2 1.0 CA A:THR201 4.3 68.2 1.0 O3A A:ATP702 4.3 58.2 1.0 CG2 A:THR201 4.4 45.4 1.0 CG A:ASP285 4.4 42.0 1.0 O1G A:ATP702 4.5 72.0 1.0 PA A:ATP702 4.5 81.7 1.0 CG A:GLU286 4.6 43.4 1.0 O A:HOH850 4.7 39.6 1.0 O A:HOH802 4.7 53.2 1.0 CB A:LYS200 4.8 51.8 1.0 O1A A:ATP702 4.9 67.6 1.0 CA A:GLY415 5.0 45.2 1.0

H.L.Tian, X.Y.Ji, X.Y.Yang, Z.X.Zhang, Z.K.Lu, K.L.Yang, C.Chen, Q.Zhao, H.Chi, Z.Y.Mu, W.Xie, Z.F.Wang, H.Q.Lou, H.T.Yang, Z.H.Rao. Structural Basis of Zika Virus Helicase in Recognizing Its Substrates Protein Cell V. 7 562 2016.
ISSN: ESSN 1674-8018
PubMed: 27430951
DOI: 10.1007/S13238-016-0293-2