Manganese in PDB 4dy8: Interactions of MN2+ with A Non-Self-Complementary Z-Type Dna Duplex

The structure of Interactions of MN2+ with A Non-Self-Complementary Z-Type Dna Duplex, PDB code: 4dy8 was solved by P.K.Mandal, S.Venkadesh, N.Gautham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.15 / 1.76
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	35.213, 35.213, 44.452, 90.00, 90.00, 120.00
R / Rfree (%)	22.5 / 26.2

The binding sites of Manganese atom in the Interactions of MN2+ with A Non-Self-Complementary Z-Type Dna Duplex (pdb code 4dy8). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Interactions of MN2+ with A Non-Self-Complementary Z-Type Dna Duplex, PDB code: 4dy8:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Interactions of MN2+ with A Non-Self-Complementary Z-Type Dna Duplex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Interactions of MN2+ with A Non-Self-Complementary Z-Type Dna Duplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn101 b:24.8 occ:0.65 MN A:MN101 0.0 24.8 0.7 MN A:MN101 1.9 26.8 0.3 O6 A:DG4 2.7 19.1 1.0 N7 A:DG4 2.9 21.5 1.0 C6 A:DG4 3.4 19.1 1.0 C5 A:DG4 3.5 20.5 1.0 C8 A:DG4 4.1 20.2 1.0 N7 D:DG16 4.1 15.7 1.0 O6 D:DG16 4.3 19.0 1.0 N1 A:DG4 4.7 17.0 1.0 O6 B:DG8 4.7 21.0 1.0 C4 A:DG4 4.8 19.0 1.0 C6 A:DC3 4.8 14.3 1.0 N4 B:DC9 4.9 23.5 1.0 N4 A:DC5 4.9 17.1 1.0 C5 D:DG16 4.9 15.4 1.0 C5 A:DC3 4.9 15.1 1.0 C6 D:DG16 5.0 17.4 1.0

Manganese binding site 2 out of 2 in the Interactions of MN2+ with A Non-Self-Complementary Z-Type Dna Duplex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Interactions of MN2+ with A Non-Self-Complementary Z-Type Dna Duplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn101 b:26.8 occ:0.35 MN A:MN101 0.0 26.8 0.3 MN A:MN101 1.9 24.8 0.7 O6 D:DG16 2.6 19.0 1.0 N7 D:DG16 3.0 15.7 1.0 C6 D:DG16 3.3 17.4 1.0 C5 D:DG16 3.5 15.4 1.0 N7 A:DG4 4.1 21.5 1.0 C7 D:DT15 4.2 9.6 0.2 C8 D:DG16 4.3 11.9 1.0 O6 A:DG4 4.3 19.1 1.0 N1 D:DG16 4.7 19.3 1.0 O4 C:DT13 4.8 19.2 1.0 C4 D:DG16 4.9 13.5 1.0 C6 D:DT15 4.9 7.7 1.0 C5 A:DG4 4.9 20.5 1.0 C6 A:DG4 5.0 19.1 1.0

P.K.Mandal, S.Venkadesh, N.Gautham. Interactions of Mn(2+) with A Non-Self-Complementary Z-Type Dna Duplex Acta Crystallogr.,Sect.F V. 68 1420 2012.
ISSN: ESSN 1744-3091
PubMed: 23192018
DOI: 10.1107/S1744309112041759