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Manganese in PDB 4dpn: Crystal Structure of Conm Complexed with Resveratrol

Protein crystallography data

The structure of Crystal Structure of Conm Complexed with Resveratrol, PDB code: 4dpn was solved by V.N.Freire, C.Gottfried, B.A.M.Rocha, B.S.Cavada, P.Delatorre, T.Santi-Gadelha, C.A.A.Gadelha, G.N.Batista, R.B.N Brega, J.C.Silva-Filho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.71 / 2.55
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 119.770, 67.500, 70.460, 90.00, 125.86, 90.00
R / Rfree (%) 16 / 25.5

Other elements in 4dpn:

The structure of Crystal Structure of Conm Complexed with Resveratrol also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Conm Complexed with Resveratrol (pdb code 4dpn). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of Conm Complexed with Resveratrol, PDB code: 4dpn:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 4dpn

Go back to Manganese Binding Sites List in 4dpn
Manganese binding site 1 out of 2 in the Crystal Structure of Conm Complexed with Resveratrol


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Conm Complexed with Resveratrol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn302

b:52.5
occ:1.00
OE1 A:GLU8 1.9 36.2 1.0
OD1 A:ASP19 2.0 34.2 1.0
NE2 A:HIS24 2.1 39.2 1.0
OD2 A:ASP10 2.3 43.2 1.0
CG A:ASP19 3.0 42.2 1.0
CE1 A:HIS24 3.1 36.7 1.0
CD2 A:HIS24 3.1 40.8 1.0
CD A:GLU8 3.1 36.0 1.0
CG A:ASP10 3.2 41.8 1.0
OD2 A:ASP19 3.5 54.1 1.0
OE2 A:GLU8 3.6 33.0 1.0
CB A:ASP10 3.8 39.9 1.0
CA A:CA301 4.0 50.1 1.0
CB A:ASP19 4.2 37.7 1.0
OD1 A:ASP10 4.2 45.9 1.0
ND1 A:HIS24 4.2 37.6 1.0
OG A:SER34 4.2 36.2 1.0
CG A:HIS24 4.3 41.1 1.0
CG A:GLU8 4.4 26.9 1.0
CA A:ASP19 4.4 37.9 1.0
O A:VAL32 4.6 45.6 1.0
N A:ASP19 4.9 41.3 1.0

Manganese binding site 2 out of 2 in 4dpn

Go back to Manganese Binding Sites List in 4dpn
Manganese binding site 2 out of 2 in the Crystal Structure of Conm Complexed with Resveratrol


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Conm Complexed with Resveratrol within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn302

b:44.1
occ:1.00
OD2 D:ASP10 2.0 42.0 1.0
OE1 D:GLU8 2.1 40.5 1.0
OD1 D:ASP19 2.4 40.4 1.0
NE2 D:HIS24 2.4 50.1 1.0
CG D:ASP19 3.0 42.4 1.0
CD D:GLU8 3.1 38.4 1.0
CG D:ASP10 3.1 43.9 1.0
OD2 D:ASP19 3.3 52.6 1.0
CE1 D:HIS24 3.3 45.7 1.0
OE2 D:GLU8 3.4 37.6 1.0
CD2 D:HIS24 3.4 44.9 1.0
CB D:ASP10 3.6 43.2 1.0
OD1 D:ASP10 4.2 35.5 1.0
CA D:CA301 4.2 53.3 1.0
CB D:ASP19 4.2 38.6 1.0
OG D:SER34 4.2 35.6 1.0
CA D:ASP19 4.4 37.9 1.0
CG D:GLU8 4.4 30.9 1.0
ND1 D:HIS24 4.5 37.4 1.0
CG D:HIS24 4.6 35.9 1.0
O D:VAL32 4.6 46.3 1.0
N D:ASP19 4.8 40.6 1.0
CG2 D:THR37 4.9 40.8 1.0

Reference:

V.N.Freire, C.Gottfried, B.A.M.Rocha, B.S.Cavada, P.Delatorre, T.Santi-Gadelha, C.A.A Gadelha, G.N.Batista, R.B.N Brega, J.C.Silva-Filho. Crystal Structure of Conm Complexed with Resveratrol To Be Published.
Page generated: Sat Aug 16 13:44:47 2025

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