Atomistry » Manganese » PDB 3kky-3m0l » 3l6b
Atomistry »
  Manganese »
    PDB 3kky-3m0l »
      3l6b »

Manganese in PDB 3l6b: X-Ray Crystal Structure of Human Serine Racemase in Complex with Malonate A Potent Inhibitor

Enzymatic activity of X-Ray Crystal Structure of Human Serine Racemase in Complex with Malonate A Potent Inhibitor

All present enzymatic activity of X-Ray Crystal Structure of Human Serine Racemase in Complex with Malonate A Potent Inhibitor:
5.1.1.18;

Protein crystallography data

The structure of X-Ray Crystal Structure of Human Serine Racemase in Complex with Malonate A Potent Inhibitor, PDB code: 3l6b was solved by M.A.Smith, J.Barker, V.Mack, A.Ebneth, I.Moraes, B.Felicetti, A.Cesura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.11 / 1.50
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 54.570, 84.290, 69.980, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 17.7

Manganese Binding Sites:

The binding sites of Manganese atom in the X-Ray Crystal Structure of Human Serine Racemase in Complex with Malonate A Potent Inhibitor (pdb code 3l6b). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the X-Ray Crystal Structure of Human Serine Racemase in Complex with Malonate A Potent Inhibitor, PDB code: 3l6b:

Manganese binding site 1 out of 1 in 3l6b

Go back to Manganese Binding Sites List in 3l6b
Manganese binding site 1 out of 1 in the X-Ray Crystal Structure of Human Serine Racemase in Complex with Malonate A Potent Inhibitor


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of X-Ray Crystal Structure of Human Serine Racemase in Complex with Malonate A Potent Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn347

b:11.2
occ:1.00
OD1 A:ASP216 2.1 5.2 1.0
OE2 A:GLU210 2.1 5.4 1.0
O A:ALA214 2.2 5.4 1.0
O A:HOH392 2.2 11.2 1.0
O A:HOH360 2.2 10.4 1.0
O A:HOH376 2.3 11.2 1.0
CD A:GLU210 3.1 4.6 1.0
CG A:ASP216 3.1 6.0 1.0
C A:ALA214 3.4 4.9 1.0
CG A:GLU210 3.5 4.5 1.0
OD2 A:ASP216 3.7 6.2 1.0
N A:ASP216 3.9 5.0 1.0
CB A:ALA214 4.0 5.1 1.0
O A:VAL240 4.1 5.4 1.0
O A:SER242 4.1 7.0 1.0
O A:VAL184 4.1 4.6 1.0
N A:CYS217 4.2 5.6 1.0
OE1 A:GLU210 4.2 5.5 1.0
N A:ASP215 4.3 5.2 1.0
CA A:ALA214 4.3 5.0 1.0
CB A:ASP216 4.3 5.0 1.0
OD1 A:ASN229 4.4 9.8 1.0
CA A:ASP215 4.5 5.3 1.0
O A:GLY185 4.5 4.9 1.0
C A:ASP215 4.5 5.4 1.0
CA A:ASP216 4.5 5.3 1.0
CB A:CYS217 4.8 6.2 1.0
CA A:GLY185 4.8 4.3 1.0
C A:ASP216 4.9 5.5 1.0
ND2 A:ASN229 4.9 6.9 1.0
CB A:GLU210 4.9 3.9 1.0
C A:VAL184 5.0 4.7 1.0

Reference:

M.A.Smith, V.Mack, A.Ebneth, I.Moraes, B.Felicetti, M.Wood, D.Schonfeld, O.Mather, A.Cesura, J.Barker. The Structure of Mammalian Serine Racemase: Evidence For Conformational Changes Upon Inhibitor Binding. J.Biol.Chem. V. 285 12873 2010.
ISSN: ISSN 0021-9258
PubMed: 20106978
DOI: 10.1074/JBC.M109.050062
Page generated: Sat Oct 5 16:47:28 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy