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Manganese in PDB 7azr: Crystal Structure of the Iron/Manganese Cambialistic Superoxide Dismutase From Rhodobacter Capsulatus Complex with Mn

Enzymatic activity of Crystal Structure of the Iron/Manganese Cambialistic Superoxide Dismutase From Rhodobacter Capsulatus Complex with Mn

All present enzymatic activity of Crystal Structure of the Iron/Manganese Cambialistic Superoxide Dismutase From Rhodobacter Capsulatus Complex with Mn:
1.15.1.1;

Protein crystallography data

The structure of Crystal Structure of the Iron/Manganese Cambialistic Superoxide Dismutase From Rhodobacter Capsulatus Complex with Mn, PDB code: 7azr was solved by A.Ponce-Salvatierra, J.A.Hermoso, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.15 / 2.10
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 162.65, 162.65, 44, 90, 90, 90
R / Rfree (%) 17.3 / 19.3

Other elements in 7azr:

The structure of Crystal Structure of the Iron/Manganese Cambialistic Superoxide Dismutase From Rhodobacter Capsulatus Complex with Mn also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of the Iron/Manganese Cambialistic Superoxide Dismutase From Rhodobacter Capsulatus Complex with Mn (pdb code 7azr). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of the Iron/Manganese Cambialistic Superoxide Dismutase From Rhodobacter Capsulatus Complex with Mn, PDB code: 7azr:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 7azr

Go back to Manganese Binding Sites List in 7azr
Manganese binding site 1 out of 2 in the Crystal Structure of the Iron/Manganese Cambialistic Superoxide Dismutase From Rhodobacter Capsulatus Complex with Mn


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Iron/Manganese Cambialistic Superoxide Dismutase From Rhodobacter Capsulatus Complex with Mn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn301

b:26.5
occ:1.00
OD2 A:ASP165 2.1 26.1 1.0
NE2 A:HIS82 2.1 28.5 1.0
NE2 A:HIS169 2.2 25.6 1.0
NE2 A:HIS28 2.2 27.5 1.0
O A:HOH434 2.4 24.9 1.0
CD2 A:HIS169 3.1 29.5 1.0
CD2 A:HIS82 3.1 29.8 1.0
CE1 A:HIS82 3.1 28.8 1.0
CG A:ASP165 3.1 25.3 1.0
CE1 A:HIS28 3.1 28.1 1.0
CD2 A:HIS28 3.2 29.4 1.0
CE1 A:HIS169 3.2 25.1 1.0
OD1 A:ASP165 3.5 22.4 1.0
ND1 A:HIS82 4.2 29.1 1.0
ND1 A:HIS28 4.2 30.5 1.0
CG A:HIS82 4.3 30.7 1.0
CG A:HIS169 4.3 27.1 1.0
ND1 A:HIS169 4.3 25.0 1.0
CG A:HIS28 4.3 31.9 1.0
CB A:ASP165 4.4 25.5 1.0
CB A:TRP167 4.6 21.8 1.0
CZ2 A:TRP131 4.6 25.6 1.0
CG A:TRP167 4.7 20.5 1.0
NE2 A:GLN78 4.8 23.9 1.0
CB A:SER170 4.8 27.4 1.0
OH A:TYR36 4.9 35.4 1.0
CE2 A:TYR36 4.9 35.3 1.0
CH2 A:TRP131 4.9 25.8 1.0

Manganese binding site 2 out of 2 in 7azr

Go back to Manganese Binding Sites List in 7azr
Manganese binding site 2 out of 2 in the Crystal Structure of the Iron/Manganese Cambialistic Superoxide Dismutase From Rhodobacter Capsulatus Complex with Mn


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of the Iron/Manganese Cambialistic Superoxide Dismutase From Rhodobacter Capsulatus Complex with Mn within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn301

b:24.4
occ:1.00
OD2 E:ASP165 2.0 23.7 1.0
NE2 E:HIS82 2.1 24.4 1.0
O E:HOH440 2.2 31.2 1.0
NE2 E:HIS169 2.2 25.7 1.0
NE2 E:HIS28 2.2 25.4 1.0
CG E:ASP165 3.1 22.5 1.0
CD2 E:HIS82 3.1 26.3 1.0
CE1 E:HIS82 3.1 26.2 1.0
CD2 E:HIS169 3.1 25.6 1.0
CE1 E:HIS28 3.1 25.4 1.0
CD2 E:HIS28 3.2 25.8 1.0
CE1 E:HIS169 3.2 24.9 1.0
OD1 E:ASP165 3.5 22.7 1.0
ND1 E:HIS82 4.2 25.3 1.0
ND1 E:HIS28 4.3 26.1 1.0
CG E:HIS82 4.3 26.4 1.0
CG E:HIS169 4.3 24.1 1.0
ND1 E:HIS169 4.3 23.5 1.0
CG E:HIS28 4.3 28.0 1.0
CB E:ASP165 4.3 22.0 1.0
CZ2 E:TRP131 4.5 23.5 1.0
CB E:TRP167 4.5 21.4 1.0
CG E:TRP167 4.7 20.0 1.0
NE2 E:GLN78 4.7 23.2 1.0
CB E:SER170 4.8 26.2 1.0
OH E:TYR36 4.8 31.6 1.0
CH2 E:TRP131 4.9 24.1 1.0
CE2 E:TYR36 4.9 26.4 1.0

Reference:

A.Ponce-Salvatierra, C.Di Capua, J.Gonzalez, N.Cortez, J.A.Hermoso. Structural and Functional Characterization of the Cambialistic Superoxide Dismutase From Rhodobacter Capsulatus. To Be Published.
Page generated: Sun Oct 6 08:06:20 2024

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