Manganese in PDB 2wod: Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum in Complex with Adp- Ribsoyllysine

Enzymatic activity of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum in Complex with Adp- Ribsoyllysine

Protein crystallography data

Other elements in 2wod:

Manganese Binding Sites:

Manganese binding site 1 out of 2 in 2wod

Manganese Binding Sites List in 2wod

Manganese binding site 1 out of 2 in the Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum in Complex with Adp- Ribsoyllysine


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum in Complex with Adp- Ribsoyllysine within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn400 b:41.9 occ:0.50 O A:HOH2034 2.6 46.3 1.0 OD1 A:ASP243 2.6 50.2 1.0 O4'A A:ZZC401 2.6 33.0 1.0 OG1 A:THR246 2.8 42.7 1.0 O3'A A:ZZC401 2.8 35.1 1.0 OD2 A:ASP243 2.8 47.6 1.0 O A:HOH2010 3.0 37.2 1.0 CG A:ASP243 3.1 45.0 1.0 OD2 A:ASP61 3.4 46.1 1.0 O A:HOH2099 3.4 41.7 1.0 C4'A A:ZZC401 3.5 34.0 1.0 C3'A A:ZZC401 3.7 33.4 1.0 CB A:THR246 4.0 43.0 1.0 CB A:ASP245 4.1 43.1 1.0 OE1 A:GLU28 4.1 51.6 1.0 N A:THR246 4.3 42.8 1.0 CG A:ASP61 4.3 45.5 1.0 C2'A A:ZZC401 4.3 35.0 1.0 OD1 A:ASN126 4.5 40.2 1.0 OD1 A:ASP61 4.5 48.5 1.0 OD1 A:ASP60 4.6 45.8 1.0 CB A:ASP243 4.6 44.0 1.0 CA A:THR246 4.7 43.0 1.0 SD A:MET130 4.8 41.4 1.0 OD2 A:ASP60 4.8 43.3 1.0 C1'A A:ZZC401 4.8 33.9 1.0 O2'A A:ZZC401 4.9 32.9 1.0 C5'A A:ZZC401 4.9 34.0 1.0 C A:ASP245 5.0 43.1 1.0 OD2 A:ASP245 5.0 46.2 1.0

Manganese binding site 2 out of 2 in 2wod

Manganese Binding Sites List in 2wod

Manganese binding site 2 out of 2 in the Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum in Complex with Adp- Ribsoyllysine


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum in Complex with Adp- Ribsoyllysine within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn400 b:36.9 occ:0.50 OD2 B:ASP245 2.5 49.8 1.0 OG1 B:THR246 2.5 44.4 1.0 O4'A B:ZZC401 2.5 50.2 1.0 OD1 B:ASP243 2.6 46.8 1.0 OD1 B:ASP245 2.6 51.6 1.0 OD2 B:ASP243 2.7 43.8 1.0 CG B:ASP245 2.9 46.6 1.0 CG B:ASP243 3.0 43.9 1.0 O3'A B:ZZC401 3.3 52.4 1.0 C4'A B:ZZC401 3.6 51.3 1.0 OE2 B:GLU28 3.6 54.0 1.0 CB B:THR246 3.7 42.8 1.0 C3'A B:ZZC401 3.8 53.2 1.0 O B:HOH2033 3.9 49.3 1.0 C2'A B:ZZC401 4.1 55.9 1.0 N B:THR246 4.2 42.7 1.0 O2'A B:ZZC401 4.2 59.1 1.0 OD2 B:ASP61 4.2 43.0 1.0 CB B:ASP245 4.4 43.7 1.0 OD1 B:ASP61 4.4 45.0 1.0 CD B:GLU28 4.4 51.1 1.0 CB B:ASP243 4.4 43.3 1.0 CA B:THR246 4.5 42.7 1.0 OD1 B:ASN126 4.6 42.7 1.0 CG B:ASP61 4.7 44.1 1.0 CG2 B:THR246 4.8 41.8 1.0 ND2 B:ASN126 4.8 39.4 1.0 OD1 B:ASP60 4.8 46.3 1.0 C5'A B:ZZC401 4.9 49.8 1.0 C B:ASP245 4.9 42.4 1.0 O B:ASP243 5.0 43.5 1.0 C1'A B:ZZC401 5.0 55.9 1.0

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