Manganese binding site 1 out of 17 in 1id3
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 1id3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: I: Da133, I: Dg134, I: Dg135, |
conact list:
Atom | Atom | Distance (A) | Mn | N9 I:Da133 | 4.77 | Mn | C8 I:Da133 | 3.74 | Mn | C5 I:Da133 | 4.43 | Mn | N7 I:Da133 | 3.48 | Mn | N9 I:Dg134 | 4.91 | Mn | C8 I:Dg134 | 3.82 | Mn | C6 I:Dg134 | 3.56 | Mn | N1 I:Dg134 | 4.94 | Mn | C5 I:Dg134 | 3.42 | Mn | N7 I:Dg134 | 2.68 | Mn | C4 I:Dg134 | 4.73 | Mn | O6 I:Dg134 | 3.04 | Mn | C6 I:Dg135 | 4.89 | Mn | O6 I:Dg135 | 3.79 |
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Manganese binding site 2 out of 17 in 1id3
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 1id3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: I: Dc69, I: Dg70, I: Dg71, |
conact list:
Atom | Atom | Distance (A) | Mn | C6 I:Dc69 | 4.12 | Mn | N1 I:Dc69 | 4.79 | Mn | C5 I:Dc69 | 4.52 | Mn | C2' I:Dc69 | 4.22 | Mn | N9 I:Dg70 | 4.90 | Mn | C8 I:Dg70 | 3.73 | Mn | C6 I:Dg70 | 3.86 | Mn | C5 I:Dg70 | 3.59 | Mn | N7 I:Dg70 | 2.69 | Mn | C4 I:Dg70 | 4.84 | Mn | O6 I:Dg70 | 3.41 | Mn | O6 I:Dg71 | 4.27 |
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Manganese binding site 3 out of 17 in 1id3
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Manganese in the PDB 1id3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: I: Dt120, I: Dg121, I: Dg122, |
conact list:
Atom | Atom | Distance (A) | Mn | C2' I:Dt120 | 4.55 | Mn | N9 I:Dg121 | 4.53 | Mn | C8 I:Dg121 | 3.46 | Mn | C6 I:Dg121 | 3.24 | Mn | N1 I:Dg121 | 4.63 | Mn | C5 I:Dg121 | 3.04 | Mn | N7 I:Dg121 | 2.29 | Mn | C4 I:Dg121 | 4.34 | Mn | OP2 I:Dg121 | 4.56 | Mn | O6 I:Dg121 | 2.82 | Mn | O6 I:Dg122 | 4.32 |
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Manganese binding site 4 out of 17 in 1id3
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Manganese in the PDB 1id3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: I: Dg78, J: Da213, J: Dg214, J: Dc215, |
conact list:
Atom | Atom | Distance (A) | Mn | C6 I:Dg78 | 4.00 | Mn | N1 I:Dg78 | 4.95 | Mn | C5 I:Dg78 | 4.70 | Mn | N7 I:Dg78 | 4.75 | Mn | O6 I:Dg78 | 3.06 | Mn | C2' J:Da213 | 4.84 | Mn | C6 J:Dg214 | 4.29 | Mn | C5 J:Dg214 | 4.47 | Mn | N7 J:Dg214 | 3.91 | Mn | O6 J:Dg214 | 3.47 | Mn | N4 J:Dc215 | 4.25 |
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Manganese binding site 5 out of 17 in 1id3
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Manganese in the PDB 1id3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: J: Dt266, J: Dg267, J: Dg268, |
conact list:
Atom | Atom | Distance (A) | Mn | C6 J:Dt266 | 4.34 | Mn | N1 J:Dt266 | 4.90 | Mn | C5 J:Dt266 | 4.86 | Mn | C1' J:Dt266 | 4.98 | Mn | C7 J:Dt266 | 4.92 | Mn | C2' J:Dt266 | 3.98 | Mn | N9 J:Dg267 | 4.64 | Mn | C8 J:Dg267 | 3.53 | Mn | C6 J:Dg267 | 3.52 | Mn | N1 J:Dg267 | 4.90 | Mn | C5 J:Dg267 | 3.26 | Mn | N7 J:Dg267 | 2.44 | Mn | C4 J:Dg267 | 4.52 | Mn | OP2 J:Dg267 | 4.41 | Mn | O6 J:Dg267 | 3.11 | Mn | O6 J:Dg268 | 4.70 |
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Manganese binding site 6 out of 17 in 1id3
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Manganese in the PDB 1id3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: J: Da279, J: Dg280, J: Dg281, |
conact list:
Atom | Atom | Distance (A) | Mn | N9 J:Da279 | 4.94 | Mn | C8 J:Da279 | 3.74 | Mn | C5 J:Da279 | 4.70 | Mn | N7 J:Da279 | 3.52 | Mn | OP2 J:Da279 | 4.58 | Mn | C8 J:Dg280 | 4.24 | Mn | C6 J:Dg280 | 3.22 | Mn | N1 J:Dg280 | 4.57 | Mn | C5 J:Dg280 | 3.42 | Mn | N7 J:Dg280 | 2.99 | Mn | C4 J:Dg280 | 4.79 | Mn | O6 J:Dg280 | 2.47 | Mn | O6 J:Dg281 | 4.45 |
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Manganese binding site 7 out of 17 in 1id3
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Manganese in the PDB 1id3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: I: Dc76, J: Dc215, J: Dg216, J: Dg217, J: Hoh7, |
conact list:
Atom | Atom | Distance (A) | Mn | N4 I:Dc76 | 4.84 | Mn | C2' J:Dc215 | 4.70 | Mn | N9 J:Dg216 | 3.95 | Mn | C8 J:Dg216 | 2.78 | Mn | C6 J:Dg216 | 4.00 | Mn | C5 J:Dg216 | 3.27 | Mn | N7 J:Dg216 | 2.18 | Mn | C4 J:Dg216 | 4.19 | Mn | OP2 J:Dg216 | 4.64 | Mn | O6 J:Dg216 | 4.02 | Mn | C6 J:Dg217 | 4.19 | Mn | C5 J:Dg217 | 4.72 | Mn | N7 J:Dg217 | 4.60 | Mn | O6 J:Dg217 | 3.30 | Mn | O J:Hoh7 | 3.61 |
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Manganese binding site 8 out of 17 in 1id3
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Manganese in the PDB 1id3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: J: Dt167, J: Dc168, |
conact list:
Atom | Atom | Distance (A) | Mn | O3' J:Dt167 | 4.66 | Mn | OP1 J:Dc168 | 3.18 | Mn | P J:Dc168 | 4.30 | Mn | OP2 J:Dc168 | 4.75 |
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Manganese binding site 9 out of 17 in 1id3
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Manganese in the PDB 1id3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: I: Dt45, I: Dg46, J: Da245, J: Dg246, J: Dc247, |
conact list:
Atom | Atom | Distance (A) | Mn | C6 I:Dt45 | 4.97 | Mn | C5 I:Dt45 | 4.24 | Mn | C7 I:Dt45 | 3.45 | Mn | C4 I:Dt45 | 4.80 | Mn | O4 I:Dt45 | 4.77 | Mn | O6 I:Dg46 | 4.21 | Mn | C8 J:Da245 | 4.21 | Mn | N7 J:Da245 | 4.03 | Mn | N9 J:Dg246 | 4.97 | Mn | C8 J:Dg246 | 3.90 | Mn | C6 J:Dg246 | 3.57 | Mn | N1 J:Dg246 | 4.94 | Mn | C5 J:Dg246 | 3.47 | Mn | N7 J:Dg246 | 2.77 | Mn | C4 J:Dg246 | 4.77 | Mn | O6 J:Dg246 | 3.02 | Mn | N4 J:Dc247 | 4.57 |
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Manganese binding site 10 out of 17 in 1id3
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Manganese in the PDB 1id3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: I: Dc107, I: Dc108, I: Da109, J: Dt184, J: Dg185, J: Dg186, |
conact list:
Atom | Atom | Distance (A) | Mn | N3 I:Dc107 | 4.93 | Mn | N3 I:Dc108 | 4.04 | Mn | C2 I:Dc108 | 4.69 | Mn | O2 I:Dc108 | 4.59 | Mn | C4 I:Dc108 | 4.79 | Mn | N4 I:Dc108 | 4.72 | Mn | C2 I:Da109 | 4.11 | Mn | N1 I:Da109 | 4.50 | Mn | N3 J:Dt184 | 4.43 | Mn | C2 J:Dt184 | 3.64 | Mn | N1 J:Dt184 | 4.34 | Mn | C1' J:Dt184 | 4.31 | Mn | O2 J:Dt184 | 2.86 | Mn | C2' J:Dt184 | 4.91 | Mn | N9 J:Dg185 | 4.37 | Mn | N3 J:Dg185 | 2.48 | Mn | N2 J:Dg185 | 2.51 | Mn | C2 J:Dg185 | 2.76 | Mn | C6 J:Dg185 | 4.93 | Mn | N1 J:Dg185 | 4.00 | Mn | C5 J:Dg185 | 4.71 | Mn | C1' J:Dg185 | 4.39 | Mn | O4' J:Dg185 | 4.05 | Mn | C4 J:Dg185 | 3.63 | Mn | N3 J:Dg186 | 3.95 | Mn | N2 J:Dg186 | 3.68 | Mn | C2 J:Dg186 | 3.36 | Mn | C6 J:Dg186 | 3.63 | Mn | N1 J:Dg186 | 3.17 | Mn | C5 J:Dg186 | 4.15 | Mn | C4 J:Dg186 | 4.22 | Mn | O6 J:Dg186 | 4.10 |
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Manganese binding site 11 out of 17 in 1id3
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Manganese in the PDB 1id3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: J: Da202, J: Da203, |
conact list:
Atom | Atom | Distance (A) | Mn | N9 J:Da202 | 4.68 | Mn | C3' J:Da202 | 4.19 | Mn | C8 J:Da202 | 4.34 | Mn | C1' J:Da202 | 4.53 | Mn | C2' J:Da202 | 3.27 | Mn | O5' J:Da202 | 4.64 | Mn | N9 J:Da203 | 4.80 | Mn | C8 J:Da203 | 3.57 | Mn | P J:Da203 | 4.84 | Mn | N7 J:Da203 | 3.84 | Mn | OP2 J:Da203 | 3.92 | Mn | O5' J:Da203 | 4.66 |
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Manganese binding site 12 out of 17 in 1id3
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Manganese in the PDB 1id3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: Arg89, C: Asn90, C: Asp91, C: Asp92, C: Asn95, |
conact list:
Atom | Atom | Distance (A) | Mn | O C:Arg89 | 3.42 | Mn | C C:Arg89 | 4.50 | Mn | O C:Asn90 | 5.00 | Mn | N C:Asn90 | 4.95 | Mn | C C:Asn90 | 4.64 | Mn | OD1 C:Asn90 | 4.84 | Mn | CA C:Asn90 | 4.43 | Mn | N C:Asp91 | 4.98 | Mn | OD1 C:Asp92 | 4.58 | Mn | ND2 C:Asn95 | 4.88 |
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Manganese binding site 13 out of 17 in 1id3
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Manganese in the PDB 1id3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: Glu62, C: Leu66, C: Asp91, C: Glu93, C: Hoh137, |
conact list:
Atom | Atom | Distance (A) | Mn | OE2 C:Glu62 | 4.17 | Mn | CD1 C:Leu66 | 4.81 | Mn | CB C:Asp91 | 4.52 | Mn | OD2 C:Asp91 | 3.41 | Mn | OD1 C:Asp91 | 2.15 | Mn | CG C:Asp91 | 3.14 | Mn | N C:Glu93 | 4.87 | Mn | OE1 C:Glu93 | 1.85 | Mn | CB C:Glu93 | 4.29 | Mn | OE2 C:Glu93 | 3.73 | Mn | CD C:Glu93 | 3.02 | Mn | CG C:Glu93 | 4.03 | Mn | O C:Hoh137 | 4.16 |
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Manganese binding site 14 out of 17 in 1id3
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 14 of Manganese in the PDB 1id3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: D: Glu108, D: Lys111, D: His112, |
conact list:
Atom | Atom | Distance (A) | Mn | OE1 D:Glu108 | 3.01 | Mn | CB D:Glu108 | 4.96 | Mn | OE2 D:Glu108 | 1.37 | Mn | CD D:Glu108 | 2.43 | Mn | CG D:Glu108 | 3.67 | Mn | CD D:Lys111 | 4.95 | Mn | NE2 D:His112 | 1.87 | Mn | ND1 D:His112 | 3.88 | Mn | CD2 D:His112 | 2.95 | Mn | CE1 D:His112 | 2.74 | Mn | CG D:His112 | 4.01 |
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Manganese binding site 15 out of 17 in 1id3
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 15 of Manganese in the PDB 1id3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: I: Dt8, E: Arg49, E: Arg53, |
conact list:
Atom | Atom | Distance (A) | Mn | OP1 I:Dt8 | 3.63 | Mn | P I:Dt8 | 4.14 | Mn | OP2 I:Dt8 | 3.64 | Mn | O E:Arg49 | 4.30 | Mn | CB E:Arg49 | 4.95 | Mn | CD E:Arg49 | 3.68 | Mn | C E:Arg49 | 4.91 | Mn | CG E:Arg49 | 3.85 | Mn | CB E:Arg53 | 3.96 | Mn | CD E:Arg53 | 3.79 | Mn | CG E:Arg53 | 3.88 | Mn | NE E:Arg53 | 4.58 | Mn | CA E:Arg53 | 4.96 |
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Manganese binding site 16 out of 17 in 1id3
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 16 of Manganese in the PDB 1id3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: G: Asp91, G: Asp92, G: Glu93, |
conact list:
Atom | Atom | Distance (A) | Mn | CB G:Asp91 | 4.97 | Mn | OD2 G:Asp91 | 3.76 | Mn | OD1 G:Asp91 | 2.81 | Mn | CG G:Asp91 | 3.63 | Mn | N G:Asp92 | 4.80 | Mn | N G:Glu93 | 4.41 | Mn | OE1 G:Glu93 | 4.92 | Mn | CB G:Glu93 | 3.96 | Mn | CD G:Glu93 | 4.44 | Mn | CG G:Glu93 | 3.29 | Mn | CA G:Glu93 | 4.84 |
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Manganese binding site 17 out of 17 in 1id3
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 17 of Manganese in the PDB 1id3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: I: Da111, G: Gly45, G: Ser46, G: Gly47, G: Ala48, H: Ile92, H: Ser93, H: Ala94, I: Hoh156, |
conact list:
Atom | Atom | Distance (A) | Mn | OP1 I:Da111 | 4.07 | Mn | O G:Gly45 | 4.19 | Mn | N G:Gly45 | 4.41 | Mn | C G:Gly45 | 3.53 | Mn | CA G:Gly45 | 3.31 | Mn | N G:Ser46 | 3.64 | Mn | OG G:Ser46 | 4.72 | Mn | C G:Ser46 | 4.50 | Mn | CA G:Ser46 | 4.59 | Mn | N G:Gly47 | 3.49 | Mn | C G:Gly47 | 4.40 | Mn | CA G:Gly47 | 4.12 | Mn | N G:Ala48 | 3.72 | Mn | CB G:Ala48 | 4.41 | Mn | CA G:Ala48 | 4.61 | Mn | O H:Ile92 | 4.31 | Mn | C H:Ile92 | 4.88 | Mn | O H:Ser93 | 4.37 | Mn | N H:Ser93 | 4.53 | Mn | CB H:Ser93 | 3.68 | Mn | OG H:Ser93 | 4.78 | Mn | C H:Ser93 | 3.50 | Mn | CA H:Ser93 | 3.25 | Mn | N H:Ala94 | 3.38 | Mn | CB H:Ala94 | 4.45 | Mn | CA H:Ala94 | 4.40 | Mn | O I:Hoh156 | 4.59 |
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