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Manganese in PDB 9j9u: Artificial Dinuclear Mn-Bound Metalloprotein 2 (D2:Mn)

Enzymatic activity of Artificial Dinuclear Mn-Bound Metalloprotein 2 (D2:Mn)

All present enzymatic activity of Artificial Dinuclear Mn-Bound Metalloprotein 2 (D2:Mn):
5.1.3.13;

Protein crystallography data

The structure of Artificial Dinuclear Mn-Bound Metalloprotein 2 (D2:Mn), PDB code: 9j9u was solved by W.J.Jeong, W.J.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.90 / 1.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 116.481, 52.336, 80.581, 90, 114.01, 90
R / Rfree (%) 19.8 / 24.7

Manganese Binding Sites:

The binding sites of Manganese atom in the Artificial Dinuclear Mn-Bound Metalloprotein 2 (D2:Mn) (pdb code 9j9u). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Artificial Dinuclear Mn-Bound Metalloprotein 2 (D2:Mn), PDB code: 9j9u:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 9j9u

Go back to Manganese Binding Sites List in 9j9u
Manganese binding site 1 out of 2 in the Artificial Dinuclear Mn-Bound Metalloprotein 2 (D2:Mn)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Artificial Dinuclear Mn-Bound Metalloprotein 2 (D2:Mn) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn201

b:45.1
occ:1.00
O A:HOH393 2.1 20.9 1.0
NE2 A:HIS132 2.4 32.4 1.0
O A:HOH421 2.6 40.8 1.0
CD2 A:HIS132 3.3 33.7 1.0
CE1 A:HIS132 3.4 33.1 1.0
OD2 A:ASP78 4.3 33.5 1.0
ND1 A:HIS130 4.4 24.0 1.0
ND1 A:HIS132 4.5 29.9 1.0
CG A:HIS132 4.5 27.5 1.0
CB A:HIS130 4.8 17.7 1.0

Manganese binding site 2 out of 2 in 9j9u

Go back to Manganese Binding Sites List in 9j9u
Manganese binding site 2 out of 2 in the Artificial Dinuclear Mn-Bound Metalloprotein 2 (D2:Mn)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Artificial Dinuclear Mn-Bound Metalloprotein 2 (D2:Mn) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn201

b:43.8
occ:1.00
O B:HOH343 2.1 25.8 1.0
O B:HOH388 2.4 44.7 1.0
O B:HOH386 2.5 40.6 1.0
NE2 B:HIS132 2.5 25.8 1.0
CD2 B:HIS132 3.3 26.6 1.0
CE1 B:HIS132 3.6 30.1 1.0
OD2 B:ASP78 4.2 27.1 1.0
ND1 B:HIS130 4.2 28.8 1.0
CG B:HIS132 4.6 24.1 1.0
ND1 B:HIS132 4.6 26.7 1.0
CB B:HIS130 4.8 20.6 1.0
CG B:HIS130 5.0 23.9 1.0

Reference:

W.J.Jeong, W.J.Song. Metal-Installer: A Protein Designer Tool to Create Metal-Binding Sites To Be Published.
Page generated: Sun Aug 17 02:37:24 2025

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