Manganese in PDB 9ij3: Cryo-Em Structure of Mili-Pirna-Target (26-Nt)

The binding sites of Manganese atom in the Cryo-Em Structure of Mili-Pirna-Target (26-Nt) (pdb code 9ij3). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Cryo-Em Structure of Mili-Pirna-Target (26-Nt), PDB code: 9ij3:

Manganese binding site 1 out of 1 in the Cryo-Em Structure of Mili-Pirna-Target (26-Nt)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Cryo-Em Structure of Mili-Pirna-Target (26-Nt) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1001 b:5.7 occ:1.00 OD1 A:ASP743 2.0 6.1 1.0 OD2 A:ASP813 2.4 3.9 1.0 OP1 C:U17 2.6 13.0 1.0 ND1 A:HIS946 2.9 4.1 1.0 CG A:ASP743 3.1 3.9 1.0 CG A:ASP813 3.1 6.3 1.0 OD1 A:ASP813 3.2 7.1 1.0 O3' C:G16 3.4 0.0 1.0 OD2 A:ASP743 3.5 5.2 1.0 CE1 A:HIS946 3.5 5.2 1.0 P C:U17 3.6 4.3 1.0 CG A:HIS946 3.9 5.9 1.0 NZ A:LYS852 3.9 3.5 1.0 C5' C:U17 4.0 5.4 1.0 O5' C:U17 4.3 1.3 1.0 CB A:ASP743 4.3 2.6 1.0 CB A:HIS946 4.4 2.9 1.0 CB A:ASP813 4.4 0.2 1.0 NE2 A:HIS946 4.6 4.5 1.0 C3' C:G16 4.7 5.0 1.0 CD2 A:HIS946 4.8 2.6 1.0 CE A:LYS852 4.8 6.2 1.0 OP2 C:U17 4.9 7.7 1.0 CA A:HIS946 4.9 3.8 1.0

Z.Q.Li, Q.K.Xu, J.P.Wu, E.Z.Shen. Structural Insights Into Rna Cleavage By Piwi Argonaute Nature 2024.
ISSN: ESSN 1476-4687