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Manganese in PDB 8vuk: The Crystal Structure of Brucella Abortus Ftrb at 1.3 Angstrom Resolution

Protein crystallography data

The structure of The Crystal Structure of Brucella Abortus Ftrb at 1.3 Angstrom Resolution, PDB code: 8vuk was solved by S.Roy, B.L.Garcia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.89 / 1.30
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 25.811, 27.033, 30.821, 83.41, 69.64, 71.81
R / Rfree (%) 18 / 19.8

Manganese Binding Sites:

The binding sites of Manganese atom in the The Crystal Structure of Brucella Abortus Ftrb at 1.3 Angstrom Resolution (pdb code 8vuk). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the The Crystal Structure of Brucella Abortus Ftrb at 1.3 Angstrom Resolution, PDB code: 8vuk:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 8vuk

Go back to Manganese Binding Sites List in 8vuk
Manganese binding site 1 out of 2 in the The Crystal Structure of Brucella Abortus Ftrb at 1.3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Crystal Structure of Brucella Abortus Ftrb at 1.3 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn201

b:15.5
occ:0.88
OD2 A:ASP119 2.0 16.4 1.0
O A:HOH304 2.1 23.6 1.0
OE1 A:GLU84 2.2 15.7 1.0
O A:HOH363 2.2 23.8 1.0
OE1 A:GLU86 2.2 18.6 1.0
CG A:ASP119 3.0 18.2 1.0
CD A:GLU84 3.2 17.1 1.0
CD A:GLU86 3.3 18.5 1.0
HB3 A:ASP119 3.3 18.4 1.0
OE2 A:GLU84 3.6 22.4 1.0
CB A:ASP119 3.6 15.3 1.0
OE2 A:GLU86 3.7 25.7 1.0
HB2 A:ASP119 3.7 18.4 1.0
OE2 A:GLU93 3.8 42.0 1.0
OD1 A:ASP119 4.0 14.9 1.0
CD A:GLU93 4.1 40.8 1.0
HB2 A:GLU86 4.1 15.8 1.0
HE1 A:PHE120 4.2 15.5 1.0
HG2 A:GLU93 4.3 33.2 1.0
HB3 A:GLU93 4.4 32.8 1.0
CG A:GLU84 4.5 14.2 1.0
OE1 A:GLU93 4.5 37.8 1.0
HB3 A:GLU84 4.6 14.3 1.0
HG2 A:GLU84 4.6 17.1 1.0
CG A:GLU86 4.6 14.4 1.0
CG A:GLU93 4.7 27.7 1.0
CB A:GLU86 4.8 13.2 1.0
HD1 A:PHE120 4.9 14.4 1.0
CE1 A:PHE120 4.9 12.9 1.0
HG3 A:GLU86 5.0 17.3 1.0

Manganese binding site 2 out of 2 in 8vuk

Go back to Manganese Binding Sites List in 8vuk
Manganese binding site 2 out of 2 in the The Crystal Structure of Brucella Abortus Ftrb at 1.3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The Crystal Structure of Brucella Abortus Ftrb at 1.3 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn202

b:14.2
occ:0.71
OD1 A:ASP119 2.1 14.9 1.0
O A:HOH370 2.2 20.1 1.0
CG A:ASP119 3.1 18.2 1.0
HE2 A:PHE117 3.5 17.5 1.0
OD2 A:ASP119 3.5 16.4 1.0
HA A:ASP119 4.1 15.0 1.0
CE2 A:PHE117 4.3 14.6 1.0
O A:ASP119 4.3 15.5 1.0
CB A:ASP119 4.5 15.3 1.0
HZ A:PHE117 4.6 19.7 1.0
O A:HOH340 4.6 29.6 1.0
OE2 A:GLU86 4.6 25.7 1.0
CA A:ASP119 4.7 12.5 1.0
O A:HOH363 4.7 23.8 1.0
HB2 A:ASP119 4.9 18.4 1.0
CZ A:PHE117 4.9 16.4 1.0

Reference:

S.Roy, A.Kerkan, D.W.Martin, S.Banerjee, B.L.Garcia. Crystal Structures of Ftra and Ftrb of the Brucella Abortus Ferrous Iron Transporter Ftrabcd System To Be Published.
Page generated: Sat Feb 8 22:55:25 2025

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