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Manganese in PDB 8un2: Microbacterium Testaceum C-Glucosyl Deglycosidase (Cgd), Wild Type (Cryo-Em)

Manganese Binding Sites:

The binding sites of Manganese atom in the Microbacterium Testaceum C-Glucosyl Deglycosidase (Cgd), Wild Type (Cryo-Em) (pdb code 8un2). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Microbacterium Testaceum C-Glucosyl Deglycosidase (Cgd), Wild Type (Cryo-Em), PDB code: 8un2:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 8un2

Go back to Manganese Binding Sites List in 8un2
Manganese binding site 1 out of 2 in the Microbacterium Testaceum C-Glucosyl Deglycosidase (Cgd), Wild Type (Cryo-Em)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Microbacterium Testaceum C-Glucosyl Deglycosidase (Cgd), Wild Type (Cryo-Em) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn501

b:99.2
occ:1.00
OE2 A:GLU292 2.0 85.9 1.0
OE1 A:GLN369 2.2 79.8 1.0
OD1 A:ASP324 2.2 86.1 1.0
OE1 A:GLU405 2.6 80.8 1.0
CD A:GLU292 3.2 85.9 1.0
CD A:GLN369 3.3 79.8 1.0
CG A:ASP324 3.4 86.1 1.0
CD A:GLU405 3.4 80.8 1.0
OE2 A:GLU405 3.6 80.8 1.0
CE A:LYS371 3.8 81.2 1.0
OE1 A:GLU292 3.9 85.9 1.0
NZ A:LYS371 4.0 81.2 1.0
NE2 A:GLN369 4.1 79.8 1.0
OD2 A:ASP324 4.2 86.1 1.0
CB A:ASP324 4.3 86.1 1.0
CG A:GLU292 4.3 85.9 1.0
CB A:GLN369 4.4 79.8 1.0
CG A:GLN369 4.4 79.8 1.0
CG A:GLU405 4.7 80.8 1.0

Manganese binding site 2 out of 2 in 8un2

Go back to Manganese Binding Sites List in 8un2
Manganese binding site 2 out of 2 in the Microbacterium Testaceum C-Glucosyl Deglycosidase (Cgd), Wild Type (Cryo-Em)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Microbacterium Testaceum C-Glucosyl Deglycosidase (Cgd), Wild Type (Cryo-Em) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn501

b:99.5
occ:1.00
OE2 B:GLU292 2.0 85.9 1.0
OE1 B:GLN369 2.2 79.7 1.0
OD1 B:ASP324 2.2 86.2 1.0
OE1 B:GLU405 2.6 80.6 1.0
CD B:GLU292 3.2 85.9 1.0
CD B:GLN369 3.4 79.7 1.0
CG B:ASP324 3.4 86.2 1.0
CD B:GLU405 3.4 80.6 1.0
OE2 B:GLU405 3.7 80.6 1.0
CE B:LYS371 3.8 81.2 1.0
OE1 B:GLU292 3.9 85.9 1.0
NZ B:LYS371 4.0 81.2 1.0
NE2 B:GLN369 4.1 79.7 1.0
OD2 B:ASP324 4.2 86.2 1.0
CB B:ASP324 4.2 86.2 1.0
CG B:GLU292 4.3 85.9 1.0
CB B:GLN369 4.4 79.7 1.0
CG B:GLN369 4.4 79.7 1.0
CG B:GLU405 4.7 80.6 1.0

Reference:

V.Furlanetto, D.C.Kalyani, V.Srivastava, B.M.Hallberg, I.Ezcurra, C.Divne. Microbacterium Testaceum C-Glucosyl Deglycosidase (Cgd), Wild Type (Cryo-Em) To Be Published.
Page generated: Sun Aug 17 01:53:36 2025

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