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Manganese in PDB 8se2: Structure of Full-Length Human Protein Kinase C Beta 1 (Pkcbi) in the Active and Inactive Conformation Soaked in Manganese Chloride

Enzymatic activity of Structure of Full-Length Human Protein Kinase C Beta 1 (Pkcbi) in the Active and Inactive Conformation Soaked in Manganese Chloride

All present enzymatic activity of Structure of Full-Length Human Protein Kinase C Beta 1 (Pkcbi) in the Active and Inactive Conformation Soaked in Manganese Chloride:
2.7.11.13;

Protein crystallography data

The structure of Structure of Full-Length Human Protein Kinase C Beta 1 (Pkcbi) in the Active and Inactive Conformation Soaked in Manganese Chloride, PDB code: 8se2 was solved by A.T.Q.Cong, T.L.Witter, E.S.Bruinsma, S.Jayaraman, J.R.Hawse, M.P.Goetz, M.J.Schellenberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.70 / 2.95
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 162.745, 157.927, 85.144, 90, 112.23, 90
R / Rfree (%) 19.4 / 25.2

Other elements in 8se2:

The structure of Structure of Full-Length Human Protein Kinase C Beta 1 (Pkcbi) in the Active and Inactive Conformation Soaked in Manganese Chloride also contains other interesting chemical elements:

Zinc (Zn) 8 atoms
Calcium (Ca) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of Full-Length Human Protein Kinase C Beta 1 (Pkcbi) in the Active and Inactive Conformation Soaked in Manganese Chloride (pdb code 8se2). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Structure of Full-Length Human Protein Kinase C Beta 1 (Pkcbi) in the Active and Inactive Conformation Soaked in Manganese Chloride, PDB code: 8se2:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 8se2

Go back to Manganese Binding Sites List in 8se2
Manganese binding site 1 out of 2 in the Structure of Full-Length Human Protein Kinase C Beta 1 (Pkcbi) in the Active and Inactive Conformation Soaked in Manganese Chloride


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Full-Length Human Protein Kinase C Beta 1 (Pkcbi) in the Active and Inactive Conformation Soaked in Manganese Chloride within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn702

b:68.8
occ:1.00
 O1A B:ANP701 2.1 70.8 1.0
O B:HOH804 2.2 80.3 1.0
OD1 B:ASN471 2.2 81.1 1.0
OD2 B:ASP484 2.2 112.9 1.0
O3G B:ANP701 2.3 79.9 1.0
N3B B:ANP701 2.6 78.4 1.0
PG B:ANP701 2.9 85.3 1.0
CG B:ASN471 3.0 70.5 1.0
CG B:ASP484 3.1 80.7 1.0
ND2 B:ASN471 3.3 69.2 1.0
CB B:ASP484 3.3 53.4 1.0
PA B:ANP701 3.5 68.8 1.0
O1G B:ANP701 3.6 69.2 1.0
PB B:ANP701 3.8 75.1 1.0
CE B:LYS468 3.9 69.5 1.0
MN B:MN703 4.1 91.7 1.0
C5' B:ANP701 4.1 71.5 1.0
NZ B:LYS468 4.1 79.6 1.0
O2B B:ANP701 4.2 99.6 1.0
O3A B:ANP701 4.2 71.6 1.0
O2G B:ANP701 4.2 74.1 1.0
OD1 B:ASP484 4.2 111.6 1.0
CB B:ASN471 4.3 64.1 1.0
O5' B:ANP701 4.3 59.6 1.0
O2A B:ANP701 4.5 44.2 1.0
OD2 B:ASP466 4.5 71.3 1.0
O B:HOH801 4.6 107.4 1.0
O B:ASP470 4.6 70.6 1.0
CA B:ASN471 4.7 61.0 1.0
O3' B:ANP701 4.7 51.3 1.0
CA B:ASP484 4.8 61.2 1.0
C B:ASP470 4.8 64.4 1.0
CB B:ASP470 4.8 65.0 1.0
C3' B:ANP701 4.9 56.1 1.0
N B:ASN471 4.9 56.4 1.0

Manganese binding site 2 out of 2 in 8se2

Go back to Manganese Binding Sites List in 8se2
Manganese binding site 2 out of 2 in the Structure of Full-Length Human Protein Kinase C Beta 1 (Pkcbi) in the Active and Inactive Conformation Soaked in Manganese Chloride


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Full-Length Human Protein Kinase C Beta 1 (Pkcbi) in the Active and Inactive Conformation Soaked in Manganese Chloride within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn703

b:91.7
occ:1.00
 O1G B:ANP701 1.7 69.2 1.0
O B:HOH803 2.0 89.7 1.0
O B:HOH801 2.1 107.4 1.0
OD1 B:ASP484 2.2 111.6 1.0
OD2 B:ASP484 2.2 112.9 1.0
O2B B:ANP701 2.2 99.6 1.0
CG B:ASP484 2.5 80.7 1.0
PG B:ANP701 3.1 85.3 1.0
PB B:ANP701 3.5 75.1 1.0
N3B B:ANP701 3.7 78.4 1.0
O3G B:ANP701 3.7 79.9 1.0
OD2 B:ASP466 3.9 71.3 1.0
CD2 B:PHE353 3.9 80.7 1.0
CB B:ASP484 4.0 53.4 1.0
MN B:MN702 4.1 68.8 1.0
CB A:ALA25 4.2 100.0 1.0
O2G B:ANP701 4.3 74.1 1.0
O1A B:ANP701 4.3 70.8 1.0
NZ B:LYS371 4.3 73.8 1.0
O3A B:ANP701 4.5 71.6 1.0
O1B B:ANP701 4.5 61.5 1.0
CA B:GLY486 4.6 71.3 1.0
N B:GLY486 4.6 64.8 1.0
CE2 B:PHE353 4.7 78.9 1.0
PA B:ANP701 4.8 68.8 1.0
CA B:ASP484 4.8 61.2 1.0
CB B:PHE353 4.8 79.5 1.0
CG B:MET487 4.8 89.7 1.0
CG B:PHE353 4.9 79.1 1.0
ND2 B:ASN471 4.9 69.2 1.0

Reference:

A.T.Q.Cong, T.L.Witter, E.S.Bruinsma, S.S.Bhattacharya, S.Jayaraman, M.B.Dugan, J.Paluncic, M.J.Kuffel, J.Farmakes, J.Alvey, X.Wu, A.P.Fields, A.Pandey, J.R.Hawse, M.P.Goetz, M.J.Schellenberg. Molecular Basis of Allosteric Regulation and Pharmaceutical Targeting of Protein Kinase C B To Be Published.
Page generated: Tue Aug 26 21:19:54 2025

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