Atomistry » Manganese » PDB 8kfu-8q1x » 8oed
Atomistry »
  Manganese »
    PDB 8kfu-8q1x »
      8oed »

Manganese in PDB 8oed: Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position

Enzymatic activity of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position

All present enzymatic activity of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position:
4.1.1.102;

Protein crystallography data

The structure of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position, PDB code: 8oed was solved by G.W.Roberts, D.Leys, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 87.71 / 1.37
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.879, 63.995, 87.708, 90, 90, 90
R / Rfree (%) 15.1 / 16.6

Other elements in 8oed:

The structure of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position also contains other interesting chemical elements:

Potassium (K) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position (pdb code 8oed). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position, PDB code: 8oed:

Manganese binding site 1 out of 1 in 8oed

Go back to Manganese Binding Sites List in 8oed
Manganese binding site 1 out of 1 in the Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn602

b:10.8
occ:1.00
 OE2 A:GLU233 2.1 10.6 1.0
OD1 A:ASN168 2.2 9.9 1.0
O A:HOH734 2.2 10.9 1.0
O9 A:BYN601 2.2 10.0 1.0
O A:HOH846 2.3 10.6 1.0
ND1 A:HIS191 2.3 10.0 1.0
CG A:ASN168 3.1 10.8 1.0
CD A:GLU233 3.1 11.0 1.0
CE1 A:HIS191 3.2 10.2 1.0
P1 A:BYN601 3.4 10.5 1.0
CG A:HIS191 3.4 10.4 1.0
ND2 A:ASN168 3.4 11.3 1.0
OE1 A:GLU233 3.5 11.5 1.0
O10 A:BYN601 3.6 10.0 1.0
K A:K603 3.7 10.6 1.0
CB A:HIS191 3.8 11.4 1.0
O8 A:BYN601 4.3 12.2 1.0
O A:ILE227 4.3 11.4 1.0
CG1 A:ILE227 4.4 12.7 1.0
CZ2 A:TRP166 4.4 12.5 1.0
NE2 A:HIS191 4.4 10.6 1.0
CB A:ASN168 4.5 10.4 1.0
O A:VAL231 4.5 12.1 1.0
CG A:GLU233 4.5 10.3 1.0
CD2 A:HIS191 4.5 10.6 1.0
O7 A:BYN601 4.5 10.5 1.0
O A:TRP169 4.6 10.2 1.0
NE1 A:TRP166 4.6 12.2 1.0
O A:PRO228 4.7 11.3 1.0
CE2 A:TRP166 4.9 12.4 1.0

Reference:

G.W.Roberts, D.Leys. Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) T40C-S315C (DB1) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position To Be Published.
Page generated: Sun Oct 6 13:29:14 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy