Atomistry » Manganese » PDB 8iri-8kft » 8jdv
Atomistry »
  Manganese »
    PDB 8iri-8kft »
      8jdv »

Manganese in PDB 8jdv: Crystal Structure of Mldhd in Complex with 2-Ketohexanoic Acid

Enzymatic activity of Crystal Structure of Mldhd in Complex with 2-Ketohexanoic Acid

All present enzymatic activity of Crystal Structure of Mldhd in Complex with 2-Ketohexanoic Acid:
1.1.2.4;

Protein crystallography data

The structure of Crystal Structure of Mldhd in Complex with 2-Ketohexanoic Acid, PDB code: 8jdv was solved by S.Jin, X.Chen, J.Yang, J.Ding, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.47 / 1.96
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 82.782, 101.403, 124.58, 90, 90, 90
R / Rfree (%) 16.8 / 20.5

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Mldhd in Complex with 2-Ketohexanoic Acid (pdb code 8jdv). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Mldhd in Complex with 2-Ketohexanoic Acid, PDB code: 8jdv:

Manganese binding site 1 out of 1 in 8jdv

Go back to Manganese Binding Sites List in 8jdv
Manganese binding site 1 out of 1 in the Crystal Structure of Mldhd in Complex with 2-Ketohexanoic Acid


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Mldhd in Complex with 2-Ketohexanoic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn502

b:17.8
occ:0.79
OE2 A:GLU442 2.1 16.9 1.0
O1A A:7N5503 2.3 22.5 1.0
O2 A:7N5503 2.3 23.7 1.0
NE2 A:HIS398 2.3 18.5 1.0
NE2 A:HIS405 2.4 18.6 1.0
O4 A:FAD501 2.7 18.1 1.0
C2 A:7N5503 3.0 27.7 1.0
C1 A:7N5503 3.0 23.3 1.0
C4 A:FAD501 3.1 16.1 1.0
CD A:GLU442 3.1 20.5 1.0
CD2 A:HIS398 3.2 17.6 1.0
CE1 A:HIS405 3.2 20.9 1.0
CE1 A:HIS398 3.3 18.1 1.0
CD2 A:HIS405 3.4 20.3 1.0
OE1 A:GLU442 3.5 17.5 1.0
N3 A:FAD501 3.5 17.0 1.0
C4X A:FAD501 3.9 20.0 1.0
NE2 A:HIS443 4.1 18.9 1.0
O1B A:7N5503 4.2 28.4 1.0
O A:HOH654 4.3 22.4 1.0
NH2 A:ARG347 4.3 19.4 1.0
N5 A:FAD501 4.3 21.1 1.0
ND1 A:HIS405 4.3 20.3 1.0
CG A:HIS398 4.4 17.9 1.0
ND1 A:HIS398 4.4 16.4 1.0
CG A:HIS405 4.4 18.5 1.0
CG A:GLU442 4.4 15.8 1.0
C3 A:7N5503 4.5 24.6 1.0
C2 A:FAD501 4.6 15.7 1.0
O A:HOH623 4.6 20.7 1.0
O A:HOH769 4.8 30.6 1.0
C10 A:FAD501 4.9 18.2 1.0
CD2 A:HIS443 4.9 17.6 1.0
C4 A:7N5503 4.9 27.4 1.0
CE1 A:HIS443 4.9 20.6 1.0

Reference:

S.Jin, X.Chen, J.Yang, J.Ding. Lactate Dehydrogenase D Is A General Dehydrogenase For D-2-Hydroxyacids Containing Hydrophobic Moieties and Plays An Important Role in the Pathogenesis of D-Lactic Acidosis To Be Published.
Page generated: Sun Aug 17 01:24:01 2025

Last articles

Mn in 9LJU
Mn in 9LJW
Mn in 9LJS
Mn in 9LJR
Mn in 9LJT
Mn in 9LJV
Mg in 9UA2
Mg in 9R96
Mg in 9VM1
Mg in 9P01
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy