Atomistry » Manganese » PDB 8f4d-8hl8 » 8f4e
Atomistry »
  Manganese »
    PDB 8f4d-8hl8 »
      8f4e »

Manganese in PDB 8f4e: Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution

Enzymatic activity of Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution

All present enzymatic activity of Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution:
1.10.3.9;

Protein crystallography data

The structure of Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution, PDB code: 8f4e was solved by A.Bhowmick, R.Hussein, I.Bogacz, P.S.Simon, M.Ibrahim, R.Chatterjee, M.D.Doyle, M.H.Cheah, T.Fransson, P.Chernev, I.-S.Kim, H.Makita, M.Dasgupta, C.J.Kaminsky, M.Zhang, J.Gatcke, S.Haupt, I.I.Nangca, S.M.Keable, O.Aydin, K.Tono, S.Owada, L.B.Gee, F.D.Fuller, A.Batyuk, R.Alonso-Mori, J.M.Holton, D.W.Paley, N.W.Moriarty, F.Mamedov, P.D.Adams, A.S.Brewster, H.Dobbek, N.K.Sauter, U.Bergmann, A.Zouni, J.Messinger, J.Kern, J.Yano, V.K.Yachandra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.58 / 2.09
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 117.052, 221.917, 308.048, 90, 90, 90
R / Rfree (%) 18.2 / 23.3

Other elements in 8f4e:

The structure of Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Magnesium (Mg) 70 atoms
Iron (Fe) 6 atoms
Calcium (Ca) 6 atoms

Manganese Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Manganese atom in the Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution (pdb code 8f4e). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 24 binding sites of Manganese where determined in the Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution, PDB code: 8f4e:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Manganese binding site 1 out of 24 in 8f4e

Go back to Manganese Binding Sites List in 8f4e
Manganese binding site 1 out of 24 in the Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn601

b:20.2
occ:0.20
MN1 A:OEY601 0.0 20.2 0.2
MN1 A:OEY601 0.1 29.7 0.7
MN1 A:OEX602 0.2 38.2 0.1
OE2 A:GLU189 1.5 41.0 0.1
O6 A:OEY601 1.7 37.0 0.7
O6 A:OEY601 1.8 30.6 0.2
O1 A:OEX602 1.8 37.0 0.1
OE2 A:GLU189 1.9 28.0 0.2
O1 A:OEY601 1.9 30.4 0.7
O1 A:OEY601 1.9 24.8 0.2
OD2 A:ASP342 2.0 27.4 0.2
O3 A:OEY601 2.0 26.0 0.2
OE2 A:GLU189 2.0 35.6 0.7
O3 A:OEY601 2.0 33.1 0.7
OD2 A:ASP342 2.0 37.9 0.1
OD2 A:ASP342 2.0 29.6 0.7
O3 A:OEX602 2.0 41.1 0.1
NE2 A:HIS332 2.1 32.4 0.7
NE2 A:HIS332 2.1 25.2 0.2
NE2 A:HIS332 2.2 40.9 0.1
CD A:GLU189 2.7 37.6 0.1
MN2 A:OEY601 2.7 26.3 0.2
MN2 A:OEX602 2.8 40.4 0.1
O5 A:OEX602 2.8 40.7 0.1
MN2 A:OEY601 2.9 31.3 0.7
CD A:GLU189 2.9 27.0 0.2
CG A:ASP342 2.9 40.4 0.1
CG A:ASP342 2.9 28.1 0.2
O5 A:OEY601 2.9 28.0 0.2
CD A:GLU189 3.0 33.3 0.7
CG A:ASP342 3.0 33.4 0.7
CD2 A:HIS332 3.1 32.7 0.7
CD2 A:HIS332 3.1 25.3 0.2
CE1 A:HIS332 3.1 38.1 0.1
CE1 A:HIS332 3.1 31.5 0.7
O5 A:OEY601 3.1 30.9 0.7
CE1 A:HIS332 3.2 25.3 0.2
CD2 A:HIS332 3.2 40.0 0.1
OD1 A:ASP342 3.2 38.2 0.1
OD1 A:ASP342 3.3 25.0 0.2
OE1 A:GLU189 3.3 27.3 0.2
OD1 A:ASP342 3.3 29.9 0.7
OE1 A:GLU189 3.3 42.8 0.1
CA1 A:OEX602 3.4 43.6 0.1
MN3 A:OEX602 3.4 38.1 0.1
CA1 A:OEY601 3.4 35.1 0.7
CA1 A:OEY601 3.4 23.3 0.2
MN3 A:OEY601 3.4 23.1 0.2
OE1 A:GLU189 3.4 34.1 0.7
O2 A:OEX602 3.4 37.3 0.1
O2 A:OEY601 3.5 24.3 0.2
MN3 A:OEY601 3.5 31.5 0.7
O2 A:OEY601 3.5 31.0 0.7
CG A:GLU189 3.9 39.7 0.1
O A:HOH770 4.0 44.4 1.0
NE2 A:HIS337 4.1 26.6 0.2
OE1 A:GLU333 4.1 32.2 0.7
NE2 A:HIS337 4.1 38.7 0.1
OE1 A:GLU333 4.1 28.9 0.2
OE1 A:GLU333 4.2 38.5 0.1
OXT A:ALA344 4.2 45.2 0.1
ND1 A:HIS332 4.2 31.0 0.7
CG A:GLU189 4.2 25.7 0.2
CG A:GLU189 4.2 29.9 0.7
CG A:HIS332 4.2 31.2 0.7
NE2 A:HIS337 4.2 29.6 0.7
ND1 A:HIS332 4.2 35.9 0.1
OXT A:ALA344 4.2 30.6 0.2
CB A:ASP342 4.2 29.6 0.2
O A:HOH801 4.2 32.1 1.0
ND1 A:HIS332 4.3 27.7 0.2
CG A:HIS332 4.3 27.6 0.2
CG A:HIS332 4.3 39.3 0.1
CB A:ASP342 4.3 41.9 0.1
OXT A:ALA344 4.3 35.1 0.7
CB A:ASP342 4.3 34.2 0.7
OE1 C:GLU354 4.4 41.9 0.1
OE1 C:GLU354 4.4 33.9 0.7
OE1 C:GLU354 4.5 22.7 0.2
CG1 A:VAL185 4.5 29.8 0.7
CG1 A:VAL185 4.6 26.9 0.2
CG1 A:VAL185 4.6 36.5 0.1
O A:HOH797 4.6 34.0 0.7
O A:HOH797 4.6 42.2 0.1
O A:ALA344 4.6 41.7 0.1
OE2 C:GLU354 4.7 38.1 0.7
OE2 C:GLU354 4.7 41.7 0.1
O A:ALA344 4.7 29.3 0.2
C A:ALA344 4.7 44.5 0.1
C A:ALA344 4.8 31.1 0.2
CD A:GLU333 4.8 39.8 0.1
OE2 C:GLU354 4.8 27.8 0.2
CE1 A:HIS337 4.8 26.5 0.2
O A:ALA344 4.8 36.7 0.7
O A:HOH797 4.8 25.1 0.2
CE1 A:HIS337 4.8 38.8 0.1
C A:ALA344 4.8 36.3 0.7
CD A:GLU333 4.9 31.3 0.7
CE1 A:HIS337 4.9 29.9 0.7
MN4 A:OEX602 5.0 41.6 0.1
CD C:GLU354 5.0 42.4 0.1
CD C:GLU354 5.0 35.3 0.7
CD A:GLU333 5.0 27.7 0.2
CD2 A:HIS337 5.0 25.7 0.2
O4 A:OEX602 5.0 36.8 0.1

Manganese binding site 2 out of 24 in 8f4e

Go back to Manganese Binding Sites List in 8f4e
Manganese binding site 2 out of 24 in the Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn601

b:29.7
occ:0.65
MN1 A:OEY601 0.0 29.7 0.7
MN1 A:OEY601 0.1 20.2 0.2
MN1 A:OEX602 0.2 38.2 0.1
OE2 A:GLU189 1.6 41.0 0.1
O6 A:OEY601 1.7 37.0 0.7
O1 A:OEX602 1.8 37.0 0.1
O6 A:OEY601 1.8 30.6 0.2
O3 A:OEY601 1.9 26.0 0.2
O1 A:OEY601 1.9 30.4 0.7
O1 A:OEY601 1.9 24.8 0.2
O3 A:OEY601 1.9 33.1 0.7
OE2 A:GLU189 1.9 28.0 0.2
OD2 A:ASP342 1.9 27.4 0.2
O3 A:OEX602 2.0 41.1 0.1
OD2 A:ASP342 2.0 37.9 0.1
OD2 A:ASP342 2.0 29.6 0.7
OE2 A:GLU189 2.1 35.6 0.7
NE2 A:HIS332 2.1 32.4 0.7
NE2 A:HIS332 2.2 25.2 0.2
NE2 A:HIS332 2.2 40.9 0.1
MN2 A:OEY601 2.7 26.3 0.2
MN2 A:OEX602 2.7 40.4 0.1
CD A:GLU189 2.8 37.6 0.1
O5 A:OEX602 2.8 40.7 0.1
MN2 A:OEY601 2.8 31.3 0.7
O5 A:OEY601 2.9 28.0 0.2
CG A:ASP342 2.9 40.4 0.1
CG A:ASP342 2.9 28.1 0.2
CG A:ASP342 3.0 33.4 0.7
CD A:GLU189 3.0 27.0 0.2
CD A:GLU189 3.1 33.3 0.7
CD2 A:HIS332 3.1 32.7 0.7
O5 A:OEY601 3.1 30.9 0.7
CD2 A:HIS332 3.1 25.3 0.2
CE1 A:HIS332 3.1 31.5 0.7
CE1 A:HIS332 3.1 38.1 0.1
OD1 A:ASP342 3.1 38.2 0.1
CD2 A:HIS332 3.2 40.0 0.1
CE1 A:HIS332 3.2 25.3 0.2
OD1 A:ASP342 3.2 25.0 0.2
OD1 A:ASP342 3.3 29.9 0.7
MN3 A:OEX602 3.3 38.1 0.1
MN3 A:OEY601 3.3 23.1 0.2
CA1 A:OEX602 3.3 43.6 0.1
OE1 A:GLU189 3.4 27.3 0.2
O2 A:OEX602 3.4 37.3 0.1
CA1 A:OEY601 3.4 35.1 0.7
CA1 A:OEY601 3.4 23.3 0.2
OE1 A:GLU189 3.4 42.8 0.1
O2 A:OEY601 3.4 24.3 0.2
MN3 A:OEY601 3.4 31.5 0.7
O2 A:OEY601 3.5 31.0 0.7
OE1 A:GLU189 3.5 34.1 0.7
CG A:GLU189 3.9 39.7 0.1
NE2 A:HIS337 4.0 26.6 0.2
OE1 A:GLU333 4.0 32.2 0.7
NE2 A:HIS337 4.0 38.7 0.1
OE1 A:GLU333 4.1 28.9 0.2
OE1 A:GLU333 4.1 38.5 0.1
O A:HOH770 4.1 44.4 1.0
OXT A:ALA344 4.1 45.2 0.1
NE2 A:HIS337 4.1 29.6 0.7
OXT A:ALA344 4.2 30.6 0.2
ND1 A:HIS332 4.2 31.0 0.7
CG A:HIS332 4.2 31.2 0.7
CB A:ASP342 4.2 29.6 0.2
ND1 A:HIS332 4.2 35.9 0.1
OXT A:ALA344 4.3 35.1 0.7
O A:HOH801 4.3 32.1 1.0
CG A:GLU189 4.3 25.7 0.2
CG A:GLU189 4.3 29.9 0.7
CG A:HIS332 4.3 27.6 0.2
ND1 A:HIS332 4.3 27.7 0.2
OE1 C:GLU354 4.3 41.9 0.1
CB A:ASP342 4.3 41.9 0.1
CG A:HIS332 4.3 39.3 0.1
CB A:ASP342 4.3 34.2 0.7
OE1 C:GLU354 4.3 33.9 0.7
OE1 C:GLU354 4.4 22.7 0.2
OE2 C:GLU354 4.6 38.1 0.7
CG1 A:VAL185 4.6 29.8 0.7
OE2 C:GLU354 4.6 41.7 0.1
CG1 A:VAL185 4.6 26.9 0.2
O A:ALA344 4.6 41.7 0.1
CG1 A:VAL185 4.6 36.5 0.1
O A:HOH797 4.6 34.0 0.7
O A:HOH797 4.6 42.2 0.1
O A:ALA344 4.7 29.3 0.2
C A:ALA344 4.7 44.5 0.1
OE2 C:GLU354 4.7 27.8 0.2
CD A:GLU333 4.7 39.8 0.1
C A:ALA344 4.7 31.1 0.2
CE1 A:HIS337 4.7 26.5 0.2
O A:ALA344 4.8 36.7 0.7
CE1 A:HIS337 4.8 38.8 0.1
C A:ALA344 4.8 36.3 0.7
O A:HOH797 4.8 25.1 0.2
CD A:GLU333 4.9 31.3 0.7
CD C:GLU354 4.9 42.4 0.1
CE1 A:HIS337 4.9 29.9 0.7
CD C:GLU354 4.9 35.3 0.7
CD2 A:HIS337 4.9 25.7 0.2
MN4 A:OEX602 4.9 41.6 0.1
CD A:GLU333 4.9 27.7 0.2
O4 A:OEX602 4.9 36.8 0.1
CD C:GLU354 5.0 27.2 0.2

Manganese binding site 3 out of 24 in 8f4e

Go back to Manganese Binding Sites List in 8f4e
Manganese binding site 3 out of 24 in the Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn601

b:26.3
occ:0.20
MN2 A:OEY601 0.0 26.3 0.2
MN2 A:OEX602 0.1 40.4 0.1
MN2 A:OEY601 0.2 31.3 0.7
O1 A:OEY601 1.7 30.4 0.7
O1 A:OEX602 1.8 37.0 0.1
OXT A:ALA344 1.8 45.2 0.1
O3 A:OEY601 1.8 33.1 0.7
O3 A:OEY601 1.8 26.0 0.2
O1 A:OEY601 1.8 24.8 0.2
O3 A:OEX602 1.9 41.1 0.1
O2 A:OEY601 1.9 24.3 0.2
OXT A:ALA344 1.9 30.6 0.2
O2 A:OEX602 1.9 37.3 0.1
OXT A:ALA344 1.9 35.1 0.7
OD1 A:ASP342 1.9 25.0 0.2
OD1 A:ASP342 2.0 29.9 0.7
OD1 A:ASP342 2.0 38.2 0.1
O2 A:OEY601 2.0 31.0 0.7
OE1 C:GLU354 2.0 33.9 0.7
OE1 C:GLU354 2.0 41.9 0.1
OE1 C:GLU354 2.1 22.7 0.2
MN1 A:OEY601 2.7 29.7 0.7
MN1 A:OEY601 2.7 20.2 0.2
CG A:ASP342 2.8 28.1 0.2
MN1 A:OEX602 2.8 38.2 0.1
C A:ALA344 2.8 44.5 0.1
CG A:ASP342 2.8 33.4 0.7
MN3 A:OEY601 2.9 23.1 0.2
C A:ALA344 2.9 36.3 0.7
MN3 A:OEX602 2.9 38.1 0.1
CG A:ASP342 2.9 40.4 0.1
C A:ALA344 2.9 31.1 0.2
CD C:GLU354 2.9 35.3 0.7
CD C:GLU354 3.0 42.4 0.1
OD2 A:ASP342 3.0 27.4 0.2
MN3 A:OEY601 3.0 31.5 0.7
OD2 A:ASP342 3.0 29.6 0.7
CD C:GLU354 3.0 27.2 0.2
O A:ALA344 3.1 41.7 0.1
OD2 A:ASP342 3.1 37.9 0.1
OE2 C:GLU354 3.2 38.1 0.7
OE2 C:GLU354 3.2 41.7 0.1
O A:ALA344 3.2 36.7 0.7
OE2 C:GLU354 3.3 27.8 0.2
O A:ALA344 3.3 29.3 0.2
CA1 A:OEX602 3.4 43.6 0.1
CA1 A:OEY601 3.4 35.1 0.7
CA1 A:OEY601 3.4 23.3 0.2
O5 A:OEX602 3.6 40.7 0.1
O6 A:OEY601 3.7 37.0 0.7
O5 A:OEY601 3.7 28.0 0.2
O5 A:OEY601 3.7 30.9 0.7
O6 A:OEY601 3.8 30.6 0.2
NE2 A:HIS337 3.9 26.6 0.2
NE2 A:HIS337 4.0 38.7 0.1
OE2 A:GLU189 4.0 41.0 0.1
NE2 A:HIS337 4.0 29.6 0.7
OE2 A:GLU189 4.0 28.0 0.2
O A:HOH810 4.0 40.4 1.0
CA A:ALA344 4.1 44.5 0.1
OE2 A:GLU189 4.1 35.6 0.7
CA A:ALA344 4.1 25.9 0.2
N A:ALA344 4.2 26.9 0.2
CA A:ALA344 4.2 34.1 0.7
N A:ALA344 4.2 46.5 0.1
CB A:ASP342 4.2 29.6 0.2
CD2 A:HIS337 4.2 25.7 0.2
N A:ALA344 4.2 34.5 0.7
CB A:ASP342 4.3 34.2 0.7
CB A:ASP342 4.3 41.9 0.1
OE1 A:GLU333 4.3 38.5 0.1
OE1 A:GLU333 4.3 32.2 0.7
O A:HOH801 4.3 32.1 1.0
CG C:GLU354 4.4 30.4 0.7
O4 A:OEX602 4.4 36.8 0.1
CG C:GLU354 4.4 41.4 0.1
CG C:GLU354 4.4 31.0 0.2
NE2 A:HIS332 4.4 32.4 0.7
CD2 A:HIS337 4.4 34.8 0.1
O4 A:OEY601 4.4 30.3 0.7
OE1 A:GLU333 4.5 28.9 0.2
NE2 A:HIS332 4.5 40.9 0.1
CD2 A:HIS337 4.5 30.1 0.7
O4 A:OEY601 4.6 27.3 0.2
NE2 A:HIS332 4.6 25.2 0.2
NH2 C:ARG357 4.6 27.4 0.2
CA A:ASP342 4.7 29.8 0.2
C A:ASP342 4.7 46.5 0.1
CA A:ASP342 4.7 42.1 0.1
CA A:ASP342 4.7 33.1 0.7
NH2 C:ARG357 4.7 37.2 0.1
C A:ASP342 4.7 35.7 0.7
OD2 A:ASP170 4.8 27.1 0.2
C A:ASP342 4.8 30.1 0.2
CB C:GLU354 4.8 28.3 0.2
O A:ASP342 4.8 42.1 0.1
NH2 C:ARG357 4.8 31.3 0.7
CD A:GLU189 4.8 37.6 0.1
CB C:GLU354 4.8 32.1 0.7
CB C:GLU354 4.8 37.0 0.1
OD2 A:ASP170 4.8 40.5 0.1
NH1 C:ARG357 4.8 31.1 0.7
O A:ASP342 4.8 36.1 0.7
OE1 A:GLU189 4.9 42.8 0.1
OD2 A:ASP170 4.9 34.8 0.7
CD A:GLU189 5.0 27.0 0.2
CD A:GLU189 5.0 33.3 0.7
OE1 A:GLU189 5.0 34.1 0.7
NH1 C:ARG357 5.0 28.3 0.2

Manganese binding site 4 out of 24 in 8f4e

Go back to Manganese Binding Sites List in 8f4e
Manganese binding site 4 out of 24 in the Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn601

b:31.3
occ:0.65
MN2 A:OEY601 0.0 31.3 0.7
MN2 A:OEX602 0.1 40.4 0.1
MN2 A:OEY601 0.2 26.3 0.2
O2 A:OEY601 1.7 24.3 0.2
O2 A:OEX602 1.8 37.3 0.1
OXT A:ALA344 1.8 45.2 0.1
O1 A:OEY601 1.8 30.4 0.7
OXT A:ALA344 1.8 30.6 0.2
O3 A:OEY601 1.8 33.1 0.7
O3 A:OEY601 1.9 26.0 0.2
O2 A:OEY601 1.9 31.0 0.7
O1 A:OEX602 1.9 37.0 0.1
OXT A:ALA344 1.9 35.1 0.7
O3 A:OEX602 1.9 41.1 0.1
OE1 C:GLU354 1.9 33.9 0.7
O1 A:OEY601 1.9 24.8 0.2
OE1 C:GLU354 1.9 41.9 0.1
OE1 C:GLU354 2.0 22.7 0.2
OD1 A:ASP342 2.1 25.0 0.2
OD1 A:ASP342 2.1 29.9 0.7
OD1 A:ASP342 2.1 38.2 0.1
C A:ALA344 2.7 44.5 0.1
MN3 A:OEY601 2.8 23.1 0.2
MN1 A:OEY601 2.8 29.7 0.7
MN3 A:OEX602 2.8 38.1 0.1
CD C:GLU354 2.8 35.3 0.7
CD C:GLU354 2.8 42.4 0.1
C A:ALA344 2.9 36.3 0.7
MN1 A:OEY601 2.9 20.2 0.2
MN1 A:OEX602 2.9 38.2 0.1
C A:ALA344 2.9 31.1 0.2
MN3 A:OEY601 2.9 31.5 0.7
CD C:GLU354 2.9 27.2 0.2
CG A:ASP342 2.9 28.1 0.2
CG A:ASP342 3.0 33.4 0.7
O A:ALA344 3.0 41.7 0.1
CG A:ASP342 3.1 40.4 0.1
OE2 C:GLU354 3.1 38.1 0.7
OE2 C:GLU354 3.1 41.7 0.1
OD2 A:ASP342 3.1 27.4 0.2
OE2 C:GLU354 3.1 27.8 0.2
O A:ALA344 3.2 36.7 0.7
OD2 A:ASP342 3.2 29.6 0.7
O A:ALA344 3.3 29.3 0.2
OD2 A:ASP342 3.3 37.9 0.1
CA1 A:OEX602 3.3 43.6 0.1
CA1 A:OEY601 3.4 35.1 0.7
CA1 A:OEY601 3.4 23.3 0.2
O5 A:OEX602 3.6 40.7 0.1
O5 A:OEY601 3.7 30.9 0.7
O5 A:OEY601 3.7 28.0 0.2
O6 A:OEY601 3.7 37.0 0.7
O6 A:OEY601 3.9 30.6 0.2
NE2 A:HIS337 3.9 26.6 0.2
NE2 A:HIS337 4.0 38.7 0.1
O A:HOH810 4.0 40.4 1.0
NE2 A:HIS337 4.1 29.6 0.7
CA A:ALA344 4.1 44.5 0.1
OE2 A:GLU189 4.1 41.0 0.1
CA A:ALA344 4.1 25.9 0.2
CA A:ALA344 4.2 34.1 0.7
OE2 A:GLU189 4.2 28.0 0.2
N A:ALA344 4.2 26.9 0.2
N A:ALA344 4.2 46.5 0.1
CG C:GLU354 4.2 30.4 0.7
O4 A:OEX602 4.3 36.8 0.1
CD2 A:HIS337 4.3 25.7 0.2
OE2 A:GLU189 4.3 35.6 0.7
CG C:GLU354 4.3 41.4 0.1
OE1 A:GLU333 4.3 38.5 0.1
N A:ALA344 4.3 34.5 0.7
CG C:GLU354 4.3 31.0 0.2
OE1 A:GLU333 4.3 32.2 0.7
O4 A:OEY601 4.3 30.3 0.7
CB A:ASP342 4.3 29.6 0.2
OE1 A:GLU333 4.4 28.9 0.2
CB A:ASP342 4.4 34.2 0.7
NH2 C:ARG357 4.4 27.4 0.2
O4 A:OEY601 4.4 27.3 0.2
O A:HOH801 4.5 32.1 1.0
CB A:ASP342 4.5 41.9 0.1
CD2 A:HIS337 4.5 34.8 0.1
CD2 A:HIS337 4.5 30.1 0.7
NE2 A:HIS332 4.5 32.4 0.7
NE2 A:HIS332 4.6 40.9 0.1
NH2 C:ARG357 4.6 37.2 0.1
NH2 C:ARG357 4.6 31.3 0.7
OD2 A:ASP170 4.7 27.1 0.2
NE2 A:HIS332 4.7 25.2 0.2
CB C:GLU354 4.7 28.3 0.2
CB C:GLU354 4.7 32.1 0.7
CB C:GLU354 4.7 37.0 0.1
NH1 C:ARG357 4.7 31.1 0.7
OD2 A:ASP170 4.7 40.5 0.1
CA A:ASP342 4.8 29.8 0.2
C A:ASP342 4.8 46.5 0.1
CA A:ASP342 4.8 42.1 0.1
CA A:ASP342 4.8 33.1 0.7
OD2 A:ASP170 4.9 34.8 0.7
C A:ASP342 4.9 35.7 0.7
NH1 C:ARG357 4.9 28.3 0.2
C A:ASP342 4.9 30.1 0.2
CD A:GLU189 4.9 37.6 0.1
CZ C:ARG357 4.9 26.4 0.2
O A:ASP342 4.9 42.1 0.1
CZ C:ARG357 4.9 31.9 0.7
O A:ASP342 5.0 36.1 0.7
NH1 C:ARG357 5.0 43.9 0.1
CZ C:ARG357 5.0 39.2 0.1

Manganese binding site 5 out of 24 in 8f4e

Go back to Manganese Binding Sites List in 8f4e
Manganese binding site 5 out of 24 in the Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn601

b:23.1
occ:0.20
MN3 A:OEY601 0.0 23.1 0.2
MN3 A:OEX602 0.1 38.1 0.1
MN3 A:OEY601 0.1 31.5 0.7
O2 A:OEX602 1.8 37.3 0.1
O2 A:OEY601 1.8 31.0 0.7
O5 A:OEY601 1.8 30.9 0.7
O4 A:OEX602 1.9 36.8 0.1
O2 A:OEY601 1.9 24.3 0.2
OE2 C:GLU354 1.9 41.7 0.1
O5 A:OEY601 1.9 28.0 0.2
O4 A:OEY601 1.9 27.3 0.2
O3 A:OEY601 1.9 33.1 0.7
O4 A:OEY601 1.9 30.3 0.7
OE1 A:GLU333 2.0 38.5 0.1
O5 A:OEX602 2.0 40.7 0.1
OE1 A:GLU333 2.0 32.2 0.7
O3 A:OEX602 2.0 41.1 0.1
OE2 C:GLU354 2.0 38.1 0.7
O3 A:OEY601 2.0 26.0 0.2
OE2 C:GLU354 2.1 27.8 0.2
OE1 A:GLU333 2.1 28.9 0.2
MN4 A:OEY601 2.7 24.7 0.2
MN4 A:OEX602 2.7 41.6 0.1
MN4 A:OEY601 2.8 33.0 0.7
MN2 A:OEY601 2.8 31.3 0.7
CD A:GLU333 2.8 39.8 0.1
MN2 A:OEX602 2.8 40.4 0.1
CD A:GLU333 2.8 31.3 0.7
MN2 A:OEY601 2.9 26.3 0.2
CD C:GLU354 2.9 42.4 0.1
CD C:GLU354 3.0 35.3 0.7
OE2 A:GLU333 3.0 38.5 0.1
CD A:GLU333 3.0 27.7 0.2
CD C:GLU354 3.0 27.2 0.2
OE2 A:GLU333 3.0 29.0 0.7
OE1 C:GLU354 3.2 41.9 0.1
O6 A:OEY601 3.2 37.0 0.7
OE2 A:GLU333 3.2 25.8 0.2
OE1 C:GLU354 3.3 33.9 0.7
MN1 A:OEX602 3.3 38.2 0.1
OE1 C:GLU354 3.3 22.7 0.2
MN1 A:OEY601 3.3 29.7 0.7
MN1 A:OEY601 3.4 20.2 0.2
O1 A:OEX602 3.5 37.0 0.1
O1 A:OEY601 3.5 30.4 0.7
O1 A:OEY601 3.5 24.8 0.2
O6 A:OEY601 3.5 30.6 0.2
CA1 A:OEX602 3.5 43.6 0.1
CA1 A:OEY601 3.5 23.3 0.2
CA1 A:OEY601 3.5 35.1 0.7
NH2 C:ARG357 3.8 27.4 0.2
OD2 A:ASP170 3.8 27.1 0.2
NH2 C:ARG357 3.9 31.3 0.7
OD1 A:ASP170 3.9 41.5 0.1
NH2 C:ARG357 3.9 37.2 0.1
OD2 A:ASP170 3.9 40.5 0.1
OD1 A:ASP170 3.9 30.2 0.7
O A:HOH704 4.0 31.4 1.0
OD1 A:ASP170 4.1 29.4 0.2
NE2 A:HIS337 4.1 26.6 0.2
OD2 A:ASP170 4.1 34.8 0.7
OXT A:ALA344 4.2 30.6 0.2
NE2 A:HIS332 4.2 40.9 0.1
CG A:GLU333 4.2 35.8 0.1
NE2 A:HIS332 4.2 32.4 0.7
OXT A:ALA344 4.3 45.2 0.1
CG A:GLU333 4.3 30.2 0.7
CG C:GLU354 4.3 41.4 0.1
NE2 A:HIS337 4.3 29.6 0.7
NE2 A:HIS337 4.3 38.7 0.1
OXT A:ALA344 4.3 35.1 0.7
CG A:ASP170 4.3 39.8 0.1
CG C:GLU354 4.4 31.0 0.2
CG C:GLU354 4.4 30.4 0.7
O A:HOH746 4.4 33.2 0.7
O A:HOH746 4.4 29.7 0.2
CG A:ASP170 4.4 26.5 0.2
O A:HOH715 4.4 24.9 0.2
O A:HOH715 4.4 38.2 0.1
CG A:GLU333 4.4 26.8 0.2
O A:HOH746 4.4 40.7 0.1
O A:ALA344 4.4 41.7 0.1
CD2 A:HIS332 4.5 40.0 0.1
CD2 A:HIS332 4.5 32.7 0.7
OD1 A:ASP342 4.5 25.0 0.2
CG A:ASP170 4.5 33.7 0.7
NE2 A:HIS332 4.5 25.2 0.2
O A:HOH715 4.5 28.8 0.7
OD1 A:ASP342 4.5 38.2 0.1
OD1 A:ASP342 4.6 29.9 0.7
OD2 A:ASP342 4.6 27.4 0.2
OE2 A:GLU189 4.6 41.0 0.1
CD2 A:HIS332 4.6 25.3 0.2
O A:ALA344 4.6 36.7 0.7
OD2 A:ASP342 4.7 29.6 0.7
O A:ALA344 4.7 29.3 0.2
O A:HOH797 4.7 34.0 0.7
O A:HOH797 4.7 42.2 0.1
CB A:GLU333 4.7 27.7 0.7
CB A:GLU333 4.7 33.6 0.1
OD2 A:ASP342 4.8 37.9 0.1
O A:HOH797 4.8 25.1 0.2
CB A:GLU333 4.8 27.0 0.2
C A:ALA344 4.8 44.5 0.1
CZ C:ARG357 4.9 31.9 0.7
CZ C:ARG357 4.9 26.4 0.2
C A:ALA344 4.9 31.1 0.2
CE1 A:HIS337 4.9 26.5 0.2
CE1 A:HIS337 5.0 38.8 0.1
CZ C:ARG357 5.0 39.2 0.1
C A:ALA344 5.0 36.3 0.7
CD2 A:HIS337 5.0 25.7 0.2
CG A:ASP342 5.0 28.1 0.2
OD1 A:ASP61 5.0 30.9 0.7

Manganese binding site 6 out of 24 in 8f4e

Go back to Manganese Binding Sites List in 8f4e
Manganese binding site 6 out of 24 in the Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn601

b:31.5
occ:0.65
MN3 A:OEY601 0.0 31.5 0.7
MN3 A:OEY601 0.1 23.1 0.2
MN3 A:OEX602 0.1 38.1 0.1
O4 A:OEX602 1.8 36.8 0.1
OE1 A:GLU333 1.8 38.5 0.1
O4 A:OEY601 1.9 27.3 0.2
OE1 A:GLU333 1.9 32.2 0.7
OE2 C:GLU354 1.9 41.7 0.1
O5 A:OEY601 1.9 30.9 0.7
O4 A:OEY601 1.9 30.3 0.7
O2 A:OEX602 1.9 37.3 0.1
O2 A:OEY601 1.9 31.0 0.7
OE2 C:GLU354 2.0 38.1 0.7
O5 A:OEY601 2.0 28.0 0.2
O2 A:OEY601 2.0 24.3 0.2
O3 A:OEY601 2.0 33.1 0.7
OE1 A:GLU333 2.0 28.9 0.2
O5 A:OEX602 2.0 40.7 0.1
OE2 C:GLU354 2.0 27.8 0.2
O3 A:OEX602 2.1 41.1 0.1
O3 A:OEY601 2.1 26.0 0.2
MN4 A:OEY601 2.7 24.7 0.2
CD A:GLU333 2.7 39.8 0.1
MN4 A:OEX602 2.7 41.6 0.1
MN4 A:OEY601 2.7 33.0 0.7
CD A:GLU333 2.7 31.3 0.7
CD C:GLU354 2.9 42.4 0.1
MN2 A:OEY601 2.9 31.3 0.7
OE2 A:GLU333 2.9 38.5 0.1
CD A:GLU333 2.9 27.7 0.2
MN2 A:OEX602 2.9 40.4 0.1
OE2 A:GLU333 3.0 29.0 0.7
MN2 A:OEY601 3.0 26.3 0.2
CD C:GLU354 3.0 35.3 0.7
CD C:GLU354 3.0 27.2 0.2
OE2 A:GLU333 3.1 25.8 0.2
OE1 C:GLU354 3.2 41.9 0.1
O6 A:OEY601 3.3 37.0 0.7
OE1 C:GLU354 3.3 33.9 0.7
OE1 C:GLU354 3.3 22.7 0.2
MN1 A:OEX602 3.4 38.2 0.1
MN1 A:OEY601 3.4 29.7 0.7
MN1 A:OEY601 3.5 20.2 0.2
O6 A:OEY601 3.6 30.6 0.2
O1 A:OEX602 3.6 37.0 0.1
O1 A:OEY601 3.6 30.4 0.7
O1 A:OEY601 3.6 24.8 0.2
CA1 A:OEX602 3.6 43.6 0.1
CA1 A:OEY601 3.6 23.3 0.2
CA1 A:OEY601 3.7 35.1 0.7
NH2 C:ARG357 3.8 27.4 0.2
OD2 A:ASP170 3.9 27.1 0.2
NH2 C:ARG357 3.9 31.3 0.7
O A:HOH704 3.9 31.4 1.0
OD1 A:ASP170 3.9 41.5 0.1
OD1 A:ASP170 3.9 30.2 0.7
NH2 C:ARG357 3.9 37.2 0.1
OD2 A:ASP170 4.0 40.5 0.1
OD1 A:ASP170 4.1 29.4 0.2
NE2 A:HIS337 4.1 26.6 0.2
CG A:GLU333 4.1 35.8 0.1
CG A:GLU333 4.2 30.2 0.7
OD2 A:ASP170 4.2 34.8 0.7
CG C:GLU354 4.2 41.4 0.1
NE2 A:HIS332 4.2 40.9 0.1
NE2 A:HIS337 4.3 29.6 0.7
NE2 A:HIS332 4.3 32.4 0.7
NE2 A:HIS337 4.3 38.7 0.1
CG A:GLU333 4.3 26.8 0.2
OXT A:ALA344 4.3 30.6 0.2
CG C:GLU354 4.3 31.0 0.2
CG C:GLU354 4.3 30.4 0.7
O A:HOH715 4.3 24.9 0.2
O A:HOH715 4.3 38.2 0.1
O A:HOH746 4.3 33.2 0.7
O A:HOH746 4.3 29.7 0.2
OXT A:ALA344 4.4 45.2 0.1
CG A:ASP170 4.4 39.8 0.1
CG A:ASP170 4.4 26.5 0.2
O A:HOH746 4.4 40.7 0.1
O A:HOH715 4.4 28.8 0.7
OXT A:ALA344 4.4 35.1 0.7
CD2 A:HIS332 4.5 40.0 0.1
CD2 A:HIS332 4.5 32.7 0.7
NE2 A:HIS332 4.5 25.2 0.2
CG A:ASP170 4.5 33.7 0.7
OD1 A:ASP342 4.6 25.0 0.2
O A:ALA344 4.6 41.7 0.1
OD1 A:ASP342 4.6 38.2 0.1
CB A:GLU333 4.6 27.7 0.7
CD2 A:HIS332 4.6 25.3 0.2
CB A:GLU333 4.6 33.6 0.1
OD1 A:ASP342 4.6 29.9 0.7
OD2 A:ASP342 4.7 27.4 0.2
CB A:GLU333 4.7 27.0 0.2
OE2 A:GLU189 4.7 41.0 0.1
OD2 A:ASP342 4.7 29.6 0.7
O A:HOH797 4.7 34.0 0.7
O A:HOH797 4.8 42.2 0.1
O A:ALA344 4.8 36.7 0.7
O A:ALA344 4.8 29.3 0.2
OD2 A:ASP342 4.8 37.9 0.1
O A:HOH797 4.8 25.1 0.2
OD1 A:ASP61 4.9 30.9 0.7
CZ C:ARG357 4.9 31.9 0.7
CE1 A:HIS337 4.9 26.5 0.2
CE1 A:HIS337 4.9 38.8 0.1
CZ C:ARG357 4.9 26.4 0.2
C A:ALA344 5.0 44.5 0.1
CE1 A:HIS337 5.0 29.9 0.7
CD2 A:HIS337 5.0 25.7 0.2

Manganese binding site 7 out of 24 in 8f4e

Go back to Manganese Binding Sites List in 8f4e
Manganese binding site 7 out of 24 in the Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn601

b:24.7
occ:0.20
MN4 A:OEY601 0.0 24.7 0.2
MN4 A:OEY601 0.1 33.0 0.7
MN4 A:OEX602 0.3 41.6 0.1
O4 A:OEX602 1.5 36.8 0.1
O4 A:OEY601 1.7 27.3 0.2
O4 A:OEY601 1.8 30.3 0.7
OD1 A:ASP170 1.8 41.5 0.1
OE2 A:GLU333 1.9 38.5 0.1
OE2 A:GLU333 1.9 29.0 0.7
O A:HOH715 2.0 38.2 0.1
OD1 A:ASP170 2.0 30.2 0.7
OD1 A:ASP170 2.0 29.4 0.2
O5 A:OEY601 2.1 30.9 0.7
O A:HOH715 2.1 24.9 0.2
OE2 A:GLU333 2.1 25.8 0.2
O A:HOH746 2.1 29.7 0.2
O A:HOH715 2.2 28.8 0.7
O A:HOH746 2.2 33.2 0.7
O5 A:OEY601 2.2 28.0 0.2
O A:HOH746 2.4 40.7 0.1
O5 A:OEX602 2.4 40.7 0.1
MN3 A:OEY601 2.7 31.5 0.7
MN3 A:OEX602 2.7 38.1 0.1
MN3 A:OEY601 2.7 23.1 0.2
CD A:GLU333 2.9 31.3 0.7
CD A:GLU333 2.9 39.8 0.1
CG A:ASP170 2.9 39.8 0.1
CG A:ASP170 3.0 26.5 0.2
CD A:GLU333 3.0 27.7 0.2
CG A:ASP170 3.1 33.7 0.7
OE1 A:GLU333 3.2 32.2 0.7
OE1 A:GLU333 3.2 38.5 0.1
OE1 A:GLU333 3.2 28.9 0.2
OD2 A:ASP170 3.3 27.1 0.2
OD2 A:ASP170 3.3 40.5 0.1
OD2 A:ASP170 3.5 34.8 0.7
O2 A:OEY601 3.6 31.0 0.7
O A:HOH704 3.7 31.4 1.0
O2 A:OEX602 3.7 37.3 0.1
O A:HOH797 3.7 25.1 0.2
O A:HOH797 3.7 34.0 0.7
O A:HOH797 3.8 42.2 0.1
O2 A:OEY601 3.8 24.3 0.2
OD1 A:ASP61 3.9 30.9 0.7
O6 A:OEY601 4.0 37.0 0.7
OD1 A:ASP61 4.0 35.3 0.1
OD1 A:ASP61 4.0 26.9 0.2
O A:HOH771 4.0 30.6 1.0
CA1 A:OEY601 4.1 23.3 0.2
O A:HOH802 4.1 38.6 1.0
CA1 A:OEX602 4.1 43.6 0.1
CA1 A:OEY601 4.1 35.1 0.7
O A:SER169 4.1 39.6 0.1
OE2 C:GLU354 4.2 41.7 0.1
CB A:ASP170 4.2 33.9 0.1
O A:SER169 4.2 22.3 0.2
O6 A:OEY601 4.2 30.6 0.2
O A:SER169 4.2 32.4 0.7
CG A:GLU333 4.2 30.2 0.7
CB A:ASP170 4.2 24.9 0.2
CG A:GLU333 4.3 35.8 0.1
OE2 C:GLU354 4.3 27.8 0.2
OE2 C:GLU354 4.3 38.1 0.7
CB A:ASP170 4.3 28.1 0.7
CA A:ASP170 4.3 37.8 0.1
NH2 C:ARG357 4.4 31.3 0.7
NH2 C:ARG357 4.4 27.4 0.2
CG A:GLU333 4.4 26.8 0.2
NH2 C:ARG357 4.4 37.2 0.1
O3 A:OEY601 4.4 33.1 0.7
CA A:ASP170 4.5 29.6 0.7
CA A:ASP170 4.5 29.3 0.2
O3 A:OEX602 4.5 41.1 0.1
O3 A:OEY601 4.5 26.0 0.2
C A:SER169 4.7 38.2 0.1
C A:SER169 4.7 25.4 0.2
C A:SER169 4.7 30.7 0.7
N A:ASP170 4.8 40.0 0.1
N A:ASP170 4.8 25.1 0.2
OG A:SER169 4.8 31.6 0.7
N A:ASP170 4.8 31.9 0.7
OG A:SER169 4.8 41.8 0.1
CG A:ASP61 4.9 31.1 0.2
CG A:ASP61 4.9 35.6 0.1
O A:HOH724 4.9 34.0 1.0
CG A:ASP61 4.9 29.5 0.7

Manganese binding site 8 out of 24 in 8f4e

Go back to Manganese Binding Sites List in 8f4e
Manganese binding site 8 out of 24 in the Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn601

b:33.0
occ:0.65
MN4 A:OEY601 0.0 33.0 0.7
MN4 A:OEY601 0.1 24.7 0.2
MN4 A:OEX602 0.3 41.6 0.1
O4 A:OEX602 1.6 36.8 0.1
O4 A:OEY601 1.8 27.3 0.2
OD1 A:ASP170 1.8 41.5 0.1
O4 A:OEY601 1.8 30.3 0.7
OE2 A:GLU333 1.9 38.5 0.1
OE2 A:GLU333 1.9 29.0 0.7
O A:HOH715 1.9 38.2 0.1
OD1 A:ASP170 2.0 30.2 0.7
OD1 A:ASP170 2.1 29.4 0.2
OE2 A:GLU333 2.1 25.8 0.2
O5 A:OEY601 2.1 30.9 0.7
O A:HOH715 2.1 24.9 0.2
O A:HOH746 2.1 29.7 0.2
O A:HOH746 2.1 33.2 0.7
O A:HOH715 2.1 28.8 0.7
O5 A:OEY601 2.2 28.0 0.2
O A:HOH746 2.3 40.7 0.1
O5 A:OEX602 2.4 40.7 0.1
MN3 A:OEY601 2.7 31.5 0.7
MN3 A:OEX602 2.7 38.1 0.1
MN3 A:OEY601 2.8 23.1 0.2
CD A:GLU333 2.9 31.3 0.7
CD A:GLU333 2.9 39.8 0.1
CG A:ASP170 2.9 39.8 0.1
CD A:GLU333 3.0 27.7 0.2
CG A:ASP170 3.0 26.5 0.2
CG A:ASP170 3.1 33.7 0.7
OE1 A:GLU333 3.2 32.2 0.7
OE1 A:GLU333 3.2 38.5 0.1
OE1 A:GLU333 3.2 28.9 0.2
OD2 A:ASP170 3.3 27.1 0.2
OD2 A:ASP170 3.4 40.5 0.1
OD2 A:ASP170 3.6 34.8 0.7
O2 A:OEY601 3.7 31.0 0.7
O A:HOH797 3.7 25.1 0.2
O A:HOH797 3.7 34.0 0.7
O A:HOH704 3.7 31.4 1.0
O A:HOH797 3.8 42.2 0.1
O2 A:OEX602 3.8 37.3 0.1
O2 A:OEY601 3.8 24.3 0.2
O A:HOH771 3.9 30.6 1.0
OD1 A:ASP61 4.0 30.9 0.7
O6 A:OEY601 4.0 37.0 0.7
OD1 A:ASP61 4.0 35.3 0.1
OD1 A:ASP61 4.0 26.9 0.2
O A:HOH802 4.0 38.6 1.0
CA1 A:OEY601 4.1 23.3 0.2
CA1 A:OEX602 4.1 43.6 0.1
O A:SER169 4.1 39.6 0.1
CA1 A:OEY601 4.1 35.1 0.7
CB A:ASP170 4.2 33.9 0.1
CG A:GLU333 4.2 30.2 0.7
O6 A:OEY601 4.2 30.6 0.2
O A:SER169 4.2 22.3 0.2
O A:SER169 4.2 32.4 0.7
OE2 C:GLU354 4.2 41.7 0.1
CG A:GLU333 4.2 35.8 0.1
CB A:ASP170 4.3 24.9 0.2
CB A:ASP170 4.3 28.1 0.7
OE2 C:GLU354 4.3 27.8 0.2
OE2 C:GLU354 4.3 38.1 0.7
CA A:ASP170 4.3 37.8 0.1
CG A:GLU333 4.4 26.8 0.2
NH2 C:ARG357 4.4 31.3 0.7
NH2 C:ARG357 4.4 27.4 0.2
O3 A:OEY601 4.4 33.1 0.7
CA A:ASP170 4.5 29.6 0.7
NH2 C:ARG357 4.5 37.2 0.1
CA A:ASP170 4.5 29.3 0.2
O3 A:OEX602 4.5 41.1 0.1
O3 A:OEY601 4.5 26.0 0.2
C A:SER169 4.7 38.2 0.1
C A:SER169 4.7 25.4 0.2
C A:SER169 4.7 30.7 0.7
N A:ASP170 4.8 40.0 0.1
N A:ASP170 4.8 25.1 0.2
N A:ASP170 4.8 31.9 0.7
OG A:SER169 4.8 31.6 0.7
O A:HOH724 4.9 34.0 1.0
OG A:SER169 4.9 41.8 0.1
CG A:ASP61 4.9 31.1 0.2
CG A:ASP61 4.9 35.6 0.1
CG A:ASP61 5.0 29.5 0.7

Manganese binding site 9 out of 24 in 8f4e

Go back to Manganese Binding Sites List in 8f4e
Manganese binding site 9 out of 24 in the Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 9 of Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn602

b:38.2
occ:0.15
MN1 A:OEX602 0.0 38.2 0.1
MN1 A:OEY601 0.2 29.7 0.7
MN1 A:OEY601 0.2 20.2 0.2
O6 A:OEY601 1.7 37.0 0.7
OE2 A:GLU189 1.7 41.0 0.1
O6 A:OEY601 1.8 30.6 0.2
O3 A:OEY601 1.8 26.0 0.2
O3 A:OEY601 1.9 33.1 0.7
O3 A:OEX602 1.9 41.1 0.1
O1 A:OEX602 2.0 37.0 0.1
NE2 A:HIS332 2.0 32.4 0.7
O1 A:OEY601 2.0 30.4 0.7
OD2 A:ASP342 2.0 27.4 0.2
OE2 A:GLU189 2.0 28.0 0.2
NE2 A:HIS332 2.0 25.2 0.2
O1 A:OEY601 2.0 24.8 0.2
NE2 A:HIS332 2.0 40.9 0.1
OD2 A:ASP342 2.1 37.9 0.1
OD2 A:ASP342 2.1 29.6 0.7
OE2 A:GLU189 2.2 35.6 0.7
O5 A:OEX602 2.7 40.7 0.1
MN2 A:OEY601 2.8 26.3 0.2
MN2 A:OEX602 2.8 40.4 0.1
O5 A:OEY601 2.8 28.0 0.2
CD A:GLU189 2.8 37.6 0.1
MN2 A:OEY601 2.9 31.3 0.7
CD2 A:HIS332 2.9 32.7 0.7
CD2 A:HIS332 2.9 25.3 0.2
O5 A:OEY601 3.0 30.9 0.7
CG A:ASP342 3.0 40.4 0.1
CD2 A:HIS332 3.0 40.0 0.1
CE1 A:HIS332 3.0 38.1 0.1
CE1 A:HIS332 3.0 31.5 0.7
CG A:ASP342 3.0 28.1 0.2
CD A:GLU189 3.1 27.0 0.2
CG A:ASP342 3.1 33.4 0.7
CE1 A:HIS332 3.1 25.3 0.2
CD A:GLU189 3.1 33.3 0.7
MN3 A:OEX602 3.2 38.1 0.1
OD1 A:ASP342 3.3 38.2 0.1
MN3 A:OEY601 3.3 23.1 0.2
MN3 A:OEY601 3.4 31.5 0.7
OD1 A:ASP342 3.4 25.0 0.2
OD1 A:ASP342 3.4 29.9 0.7
O2 A:OEX602 3.4 37.3 0.1
CA1 A:OEX602 3.4 43.6 0.1
OE1 A:GLU189 3.4 27.3 0.2
O2 A:OEY601 3.4 24.3 0.2
CA1 A:OEY601 3.4 35.1 0.7
CA1 A:OEY601 3.4 23.3 0.2
OE1 A:GLU189 3.5 42.8 0.1
O2 A:OEY601 3.5 31.0 0.7
OE1 A:GLU189 3.6 34.1 0.7
OE1 A:GLU333 3.9 32.2 0.7
OE1 A:GLU333 3.9 28.9 0.2
NE2 A:HIS337 3.9 26.6 0.2
OE1 A:GLU333 3.9 38.5 0.1
NE2 A:HIS337 4.0 38.7 0.1
CG A:GLU189 4.0 39.7 0.1
CG A:HIS332 4.1 31.2 0.7
NE2 A:HIS337 4.1 29.6 0.7
ND1 A:HIS332 4.1 31.0 0.7
ND1 A:HIS332 4.1 35.9 0.1
CG A:HIS332 4.1 27.6 0.2
CG A:HIS332 4.2 39.3 0.1
O A:HOH770 4.2 44.4 1.0
ND1 A:HIS332 4.2 27.7 0.2
OXT A:ALA344 4.3 45.2 0.1
OXT A:ALA344 4.3 30.6 0.2
OE1 C:GLU354 4.3 41.9 0.1
CG A:GLU189 4.3 29.9 0.7
CB A:ASP342 4.3 29.6 0.2
CG A:GLU189 4.4 25.7 0.2
OE1 C:GLU354 4.4 33.9 0.7
OXT A:ALA344 4.4 35.1 0.7
CB A:ASP342 4.4 41.9 0.1
CB A:ASP342 4.4 34.2 0.7
O A:HOH801 4.4 32.1 1.0
OE1 C:GLU354 4.5 22.7 0.2
CG1 A:VAL185 4.5 29.8 0.7
OE2 C:GLU354 4.5 38.1 0.7
CG1 A:VAL185 4.5 26.9 0.2
CG1 A:VAL185 4.5 36.5 0.1
OE2 C:GLU354 4.5 41.7 0.1
CD A:GLU333 4.6 39.8 0.1
O A:HOH797 4.6 34.0 0.7
O A:HOH797 4.6 42.2 0.1
CE1 A:HIS337 4.7 26.5 0.2
OE2 C:GLU354 4.7 27.8 0.2
CE1 A:HIS337 4.7 38.8 0.1
CD A:GLU333 4.7 31.3 0.7
O A:ALA344 4.7 41.7 0.1
CD A:GLU333 4.8 27.7 0.2
CE1 A:HIS337 4.8 29.9 0.7
O A:HOH797 4.8 25.1 0.2
O A:ALA344 4.8 29.3 0.2
MN4 A:OEX602 4.8 41.6 0.1
C A:ALA344 4.8 44.5 0.1
O4 A:OEX602 4.9 36.8 0.1
C A:ALA344 4.9 31.1 0.2
CD C:GLU354 4.9 42.4 0.1
CD C:GLU354 4.9 35.3 0.7
O A:ALA344 4.9 36.7 0.7
OE2 A:GLU333 4.9 38.5 0.1
CD2 A:HIS337 4.9 25.7 0.2
C A:ALA344 4.9 36.3 0.7
CD C:GLU354 5.0 27.2 0.2

Manganese binding site 10 out of 24 in 8f4e

Go back to Manganese Binding Sites List in 8f4e
Manganese binding site 10 out of 24 in the Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 10 of Rt Xfel Structure of Photosystem II 250 Microseconds After the Third Illumination at 2.09 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn602

b:40.4
occ:0.15
MN2 A:OEX602 0.0 40.4 0.1
MN2 A:OEY601 0.1 26.3 0.2
MN2 A:OEY601 0.1 31.3 0.7
O1 A:OEY601 1.7 30.4 0.7
O1 A:OEX602 1.8 37.0 0.1
OXT A:ALA344 1.8 45.2 0.1
O2 A:OEY601 1.8 24.3 0.2
O2 A:OEX602 1.8 37.3 0.1
O3 A:OEY601 1.8 33.1 0.7
O3 A:OEY601 1.8 26.0 0.2
O1 A:OEY601 1.8 24.8 0.2
OXT A:ALA344 1.9 30.6 0.2
O3 A:OEX602 1.9 41.1 0.1
OXT A:ALA344 1.9 35.1 0.7
O2 A:OEY601 1.9 31.0 0.7
OD1 A:ASP342 2.0 25.0 0.2
OE1 C:GLU354 2.0 33.9 0.7
OE1 C:GLU354 2.0 41.9 0.1
OD1 A:ASP342 2.0 29.9 0.7
OD1 A:ASP342 2.1 38.2 0.1
OE1 C:GLU354 2.1 22.7 0.2
MN1 A:OEY601 2.7 29.7 0.7
C A:ALA344 2.7 44.5 0.1
MN1 A:OEY601 2.8 20.2 0.2
MN1 A:OEX602 2.8 38.2 0.1
MN3 A:OEY601 2.8 23.1 0.2
CG A:ASP342 2.8 28.1 0.2
MN3 A:OEX602 2.8 38.1 0.1
C A:ALA344 2.9 36.3 0.7
C A:ALA344 2.9 31.1 0.2
CG A:ASP342 2.9 33.4 0.7
MN3 A:OEY601 2.9 31.5 0.7
CD C:GLU354 2.9 35.3 0.7
CD C:GLU354 2.9 42.4 0.1
CG A:ASP342 3.0 40.4 0.1
CD C:GLU354 3.0 27.2 0.2
OD2 A:ASP342 3.0 27.4 0.2
O A:ALA344 3.0 41.7 0.1
OD2 A:ASP342 3.1 29.6 0.7
OE2 C:GLU354 3.2 38.1 0.7
O A:ALA344 3.2 36.7 0.7
OE2 C:GLU354 3.2 41.7 0.1
OD2 A:ASP342 3.2 37.9 0.1
OE2 C:GLU354 3.2 27.8 0.2
O A:ALA344 3.3 29.3 0.2
CA1 A:OEX602 3.3 43.6 0.1
CA1 A:OEY601 3.3 35.1 0.7
CA1 A:OEY601 3.4 23.3 0.2
O5 A:OEX602 3.5 40.7 0.1
O5 A:OEY601 3.6 28.0 0.2
O6 A:OEY601 3.6 37.0 0.7
O5 A:OEY601 3.6 30.9 0.7
O6 A:OEY601 3.8 30.6 0.2
NE2 A:HIS337 3.9 26.6 0.2
OE2 A:GLU189 4.0 41.0 0.1
NE2 A:HIS337 4.0 38.7 0.1
OE2 A:GLU189 4.1 28.0 0.2
NE2 A:HIS337 4.1 29.6 0.7
CA A:ALA344 4.1 44.5 0.1
O A:HOH810 4.1 40.4 1.0
CA A:ALA344 4.1 25.9 0.2
OE2 A:GLU189 4.1 35.6 0.7
CA A:ALA344 4.2 34.1 0.7
N A:ALA344 4.2 26.9 0.2
N A:ALA344 4.2 46.5 0.1
CB A:ASP342 4.3 29.6 0.2
N A:ALA344 4.3 34.5 0.7
CD2 A:HIS337 4.3 25.7 0.2
OE1 A:GLU333 4.3 38.5 0.1
OE1 A:GLU333 4.3 32.2 0.7
O4 A:OEX602 4.3 36.8 0.1
CB A:ASP342 4.3 34.2 0.7
CG C:GLU354 4.4 30.4 0.7
O A:HOH801 4.4 32.1 1.0
O4 A:OEY601 4.4 30.3 0.7
CG C:GLU354 4.4 41.4 0.1
CB A:ASP342 4.4 41.9 0.1
CG C:GLU354 4.4 31.0 0.2
NE2 A:HIS332 4.4 32.4 0.7
OE1 A:GLU333 4.4 28.9 0.2
NE2 A:HIS332 4.5 40.9 0.1
CD2 A:HIS337 4.5 34.8 0.1
O4 A:OEY601 4.5 27.3 0.2
CD2 A:HIS337 4.5 30.1 0.7
NH2 C:ARG357 4.5 27.4 0.2
NE2 A:HIS332 4.6 25.2 0.2
NH2 C:ARG357 4.7 37.2 0.1
OD2 A:ASP170 4.7 27.1 0.2
C A:ASP342 4.7 46.5 0.1
CA A:ASP342 4.7 29.8 0.2
NH2 C:ARG357 4.7 31.3 0.7
OD2 A:ASP170 4.7 40.5 0.1
CA A:ASP342 4.8 42.1 0.1
NH1 C:ARG357 4.8 31.1 0.7
CB C:GLU354 4.8 28.3 0.2
CA A:ASP342 4.8 33.1 0.7
CD A:GLU189 4.8 37.6 0.1
C A:ASP342 4.8 35.7 0.7
CB C:GLU354 4.8 32.1 0.7
CB C:GLU354 4.8 37.0 0.1
C A:ASP342 4.8 30.1 0.2
O A:ASP342 4.8 42.1 0.1
OD2 A:ASP170 4.9 34.8 0.7
O A:ASP342 4.9 36.1 0.7
OE1 A:GLU189 4.9 42.8 0.1
NH1 C:ARG357 4.9 28.3 0.2
OE1 A:GLU189 5.0 34.1 0.7
CD A:GLU189 5.0 27.0 0.2
CD A:GLU189 5.0 33.3 0.7

Reference:

A.Bhowmick, R.Hussein, I.Bogacz, P.S.Simon, M.Ibrahim, R.Chatterjee, M.D.Doyle, M.H.Cheah, T.Fransson, P.Chernev, I.-S.Kim, H.Makita, M.Dasgupta, C.J.Kaminsky, M.Zhang, J.Gatcke, S.Haupt, I.I.Nangca, S.M.Keable, O.Aydin, K.Tono, S.Owada, L.B.Gee, F.D.Fuller, A.Batyuk, R.Alonso-Mori, J.M.Holton, D.W.Paley, N.W.Moriarty, F.Mamedov, P.D.Adams, A.S.Brewster, H.Dobbek, N.K.Sauter, U.Bergmann, A.Zouni, J.Messinger, J.Kern, J.Yano, V.K.Yachandra. Structural Evidence For Intermediates During O2 Formation in Photosystem II To Be Published.
Page generated: Sun Oct 6 11:50:22 2024

Last articles

As in 1FOO
As in 1FOP
As in 1FOL
As in 1F0J
As in 1FF3
As in 1FOJ
As in 1FOI
As in 1FE8
As in 1F35
As in 1EQZ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy