Atomistry » Manganese » PDB 7z03-8awv » 8a1a
Atomistry »
  Manganese »
    PDB 7z03-8awv »
      8a1a »

Manganese in PDB 8a1a: Structure of A Leucinostatin Derivative Determined By Host Lattice Display : L1F11V1 Construct

Protein crystallography data

The structure of Structure of A Leucinostatin Derivative Determined By Host Lattice Display : L1F11V1 Construct, PDB code: 8a1a was solved by P.R.E.Mittl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.28 / 2.05
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 191.866, 191.866, 122.409, 90, 90, 120
R / Rfree (%) 16.1 / 18.5

Other elements in 8a1a:

The structure of Structure of A Leucinostatin Derivative Determined By Host Lattice Display : L1F11V1 Construct also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Fluorine (F) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of A Leucinostatin Derivative Determined By Host Lattice Display : L1F11V1 Construct (pdb code 8a1a). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Structure of A Leucinostatin Derivative Determined By Host Lattice Display : L1F11V1 Construct, PDB code: 8a1a:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in 8a1a

Go back to Manganese Binding Sites List in 8a1a
Manganese binding site 1 out of 4 in the Structure of A Leucinostatin Derivative Determined By Host Lattice Display : L1F11V1 Construct


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of A Leucinostatin Derivative Determined By Host Lattice Display : L1F11V1 Construct within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1701

b:44.9
occ:1.00
OD1 A:ASP601 2.3 37.8 1.0
O A:ALA607 2.3 38.5 1.0
OD1 A:ASN603 2.3 39.1 1.0
OD1 A:ASP605 2.3 42.9 1.0
O A:HOH2318 2.4 35.5 1.0
OD1 A:ASP612 2.5 34.8 1.0
OD2 A:ASP612 2.5 35.2 1.0
CG A:ASP612 2.9 34.6 1.0
CG A:ASP605 3.3 42.7 1.0
CG A:ASN603 3.3 38.8 1.0
C A:ALA607 3.5 38.5 1.0
CG A:ASP601 3.5 39.5 1.0
ND2 A:ASN603 3.8 37.6 1.0
OD2 A:ASP605 3.8 44.1 1.0
N A:ALA607 4.2 40.0 1.0
N A:ASP605 4.2 39.9 1.0
CA A:ASP601 4.2 36.1 1.0
OD2 A:ASP601 4.3 42.6 1.0
N A:ASN603 4.3 38.1 1.0
CA A:ALA607 4.3 39.0 1.0
CB A:ASP612 4.4 32.3 1.0
CB A:ASP601 4.4 36.2 1.0
N A:VAL608 4.4 38.0 1.0
CA A:VAL608 4.5 37.4 1.0
CB A:ASP605 4.5 39.7 1.0
C A:ASP601 4.5 37.0 1.0
N A:GLU604 4.6 40.6 1.0
CB A:ASN603 4.6 38.2 1.0
N A:GLU602 4.7 37.3 1.0
CA A:ASP605 4.8 39.6 1.0
CA A:ASN603 4.8 38.5 1.0
CB A:ALA607 4.8 38.9 1.0
OD1 A:ASN609 4.8 35.5 1.0
C A:ASN603 4.8 40.3 1.0
N A:GLY606 4.9 40.2 1.0
N A:ASN609 4.9 35.8 1.0
C A:ASP605 5.0 39.9 1.0

Manganese binding site 2 out of 4 in 8a1a

Go back to Manganese Binding Sites List in 8a1a
Manganese binding site 2 out of 4 in the Structure of A Leucinostatin Derivative Determined By Host Lattice Display : L1F11V1 Construct


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of A Leucinostatin Derivative Determined By Host Lattice Display : L1F11V1 Construct within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1702

b:43.5
occ:1.00
OD2 A:ASP752 2.1 38.5 1.0
NE2 A:HIS1299 2.1 33.5 1.0
OE1 A:GLU727 2.2 40.6 1.0
O A:HOH2087 2.3 35.1 1.0
O A:HOH1954 2.4 34.9 1.0
O A:HOH1843 2.4 36.1 1.0
CE1 A:HIS1299 3.1 33.0 1.0
CD A:GLU727 3.1 39.9 1.0
CG A:ASP752 3.1 37.4 1.0
CD2 A:HIS1299 3.2 32.6 1.0
OE2 A:GLU727 3.4 40.8 1.0
OD1 A:ASP752 3.6 38.5 1.0
O A:HOH1875 4.0 28.4 1.0
O A:HOH1892 4.2 34.1 1.0
CA A:SER1301 4.3 34.8 1.0
ND1 A:HIS1299 4.3 32.4 1.0
CG A:HIS1299 4.3 31.9 1.0
O A:HOH2290 4.3 37.2 1.0
O A:LEU1300 4.3 33.9 1.0
O A:HOH1945 4.4 33.4 1.0
CB A:ASP752 4.4 34.4 1.0
CG A:GLU727 4.5 36.1 1.0
N A:GLU1302 4.6 35.9 1.0
CB A:GLU727 4.8 35.5 1.0
OG A:SER683 4.8 34.6 1.0
CB A:SER1301 4.9 35.9 1.0
C A:SER1301 4.9 35.7 1.0
CB A:LEU751 5.0 34.0 1.0
N A:SER1301 5.0 34.5 1.0
C A:LEU1300 5.0 33.9 1.0

Manganese binding site 3 out of 4 in 8a1a

Go back to Manganese Binding Sites List in 8a1a
Manganese binding site 3 out of 4 in the Structure of A Leucinostatin Derivative Determined By Host Lattice Display : L1F11V1 Construct


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of A Leucinostatin Derivative Determined By Host Lattice Display : L1F11V1 Construct within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1703

b:45.9
occ:1.00
O A:ALA1136 2.3 37.8 1.0
O A:GLY1108 2.3 34.8 1.0
O A:HOH2000 2.4 33.4 1.0
OD1 A:ASN1135 2.4 41.1 1.0
O A:HOH1826 2.5 33.3 1.0
OD2 A:ASP1248 2.5 40.1 1.0
OD1 A:ASP1248 2.7 38.1 1.0
CG A:ASP1248 2.9 38.4 1.0
C A:GLY1108 3.4 34.8 1.0
C A:ALA1136 3.5 38.2 1.0
CG A:ASN1135 3.6 40.9 1.0
CA A:GLY1108 3.8 34.2 1.0
N A:ALA1136 3.9 39.5 1.0
C A:ASN1135 4.1 40.7 1.0
CA A:ALA1136 4.2 39.1 1.0
ND2 A:ASN1135 4.3 40.9 1.0
OD1 A:ASP1249 4.4 40.3 1.0
CB A:ASP1248 4.4 35.2 1.0
OD1 A:ASN1110 4.5 37.7 1.0
O A:ASN1135 4.5 41.0 1.0
N A:MET1137 4.6 37.8 1.0
N A:PHE1109 4.6 35.2 1.0
NE2 A:HIS1203 4.6 34.9 1.0
O A:HOH2534 4.7 35.0 1.0
CB A:ASN1135 4.7 39.9 1.0
CA A:ASN1135 4.7 41.1 1.0
O A:HOH2279 4.7 40.9 1.0
CA A:MET1137 4.8 37.5 1.0
CB A:ALA1136 4.9 38.8 1.0
ND2 A:ASN1110 4.9 36.4 1.0
CB A:PHE1109 4.9 34.9 1.0
C A:PHE1109 5.0 36.2 1.0
CG A:ASN1110 5.0 36.6 1.0
O A:HOH2206 5.0 44.6 1.0
CG A:ASP1249 5.0 40.4 1.0

Manganese binding site 4 out of 4 in 8a1a

Go back to Manganese Binding Sites List in 8a1a
Manganese binding site 4 out of 4 in the Structure of A Leucinostatin Derivative Determined By Host Lattice Display : L1F11V1 Construct


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of A Leucinostatin Derivative Determined By Host Lattice Display : L1F11V1 Construct within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1704

b:49.8
occ:1.00
O A:GLY1274 2.3 38.0 1.0
O A:TRP1325 2.3 37.8 1.0
OE2 A:GLU1276 2.3 45.6 1.0
O A:ASP1322 2.4 41.0 1.0
OD2 A:ASP1442 2.5 41.2 1.0
O A:HOH2030 2.5 38.1 1.0
OD1 A:ASP1442 2.6 38.6 1.0
CG A:ASP1442 2.9 39.1 1.0
C A:GLY1274 3.4 37.1 1.0
CD A:GLU1276 3.5 42.8 1.0
C A:TRP1325 3.5 37.2 1.0
C A:ASP1322 3.5 41.4 1.0
CA A:GLY1274 3.9 36.4 1.0
CG A:GLU1276 4.1 38.4 1.0
N A:TRP1325 4.1 37.0 1.0
CB A:ASP1322 4.1 49.5 1.0
CA A:ASP1322 4.3 43.5 1.0
CA A:TRP1325 4.3 36.9 1.0
N A:ASP1322 4.4 42.5 1.0
CB A:ASP1442 4.4 38.9 1.0
OG A:SER1326 4.4 39.5 1.0
N A:GLY1323 4.4 39.9 1.0
OE1 A:GLU1276 4.5 41.9 1.0
N A:SER1326 4.5 36.6 1.0
ND2 A:ASN1443 4.5 49.5 1.0
N A:PHE1275 4.5 36.6 1.0
O A:HOH3063 4.5 47.2 1.0
CA A:GLY1323 4.6 39.5 1.0
CA A:SER1326 4.7 36.7 1.0
CB A:TRP1325 4.8 37.0 1.0
N A:THR1324 4.8 38.6 1.0
C A:GLY1323 4.9 39.1 1.0
CB A:PHE1275 5.0 35.7 1.0
N A:GLU1276 5.0 37.0 1.0

Reference:

C.Kiss, F.M.Gall, B.Dreier, M.Adams, R.Riedl, A.Pluckthun, P.R.E.Mittl. Structure of A Hydrophobic Leucinostatin Derivative Determined By Host Lattice Display. Acta Crystallogr D Struct V. 78 1439 2022BIOL.
ISSN: ISSN 2059-7983
PubMed: 36458615
DOI: 10.1107/S2059798322010762
Page generated: Sun Aug 17 00:06:44 2025

Last articles

Mn in 9LJU
Mn in 9LJW
Mn in 9LJS
Mn in 9LJR
Mn in 9LJT
Mn in 9LJV
Mg in 9UA2
Mg in 9R96
Mg in 9VM1
Mg in 9P01
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy