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Manganese in PDB 7zz0: Cryo-Em Structure of "Ct Empty" Conformation of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa

Enzymatic activity of Cryo-Em Structure of "Ct Empty" Conformation of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa

All present enzymatic activity of Cryo-Em Structure of "Ct Empty" Conformation of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa:
6.4.1.1;

Other elements in 7zz0:

The structure of Cryo-Em Structure of "Ct Empty" Conformation of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Cryo-Em Structure of "Ct Empty" Conformation of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa (pdb code 7zz0). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Cryo-Em Structure of "Ct Empty" Conformation of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa, PDB code: 7zz0:

Manganese binding site 1 out of 1 in 7zz0

Go back to Manganese Binding Sites List in 7zz0
Manganese binding site 1 out of 1 in the Cryo-Em Structure of "Ct Empty" Conformation of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Cryo-Em Structure of "Ct Empty" Conformation of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1202

b:80.1
occ:1.00
OQ2 A:KCX703 2.1 60.2 1.0
OD2 A:ASP534 2.2 55.1 1.0
OQ1 A:KCX703 2.2 59.5 1.0
O A:HOH1350 2.2 63.0 1.0
NE2 A:HIS734 2.2 46.7 1.0
NE2 A:HIS732 2.3 43.7 1.0
CX A:KCX703 2.5 56.6 1.0
CE1 A:HIS734 3.0 42.5 1.0
CG A:ASP534 3.1 47.6 1.0
CE1 A:HIS732 3.1 38.8 1.0
CD2 A:HIS732 3.3 36.3 1.0
CD2 A:HIS734 3.3 40.7 1.0
OD1 A:ASP534 3.5 54.0 1.0
O A:HOH1339 3.7 58.9 1.0
NZ A:KCX703 3.8 43.8 1.0
NE2 A:GLN768 3.9 48.1 1.0
NH2 A:ARG533 4.0 46.7 1.0
ND1 A:HIS734 4.2 44.2 1.0
ND1 A:HIS732 4.3 40.6 1.0
CG A:HIS732 4.4 34.4 1.0
CG A:HIS734 4.4 45.4 1.0
O A:HOH1320 4.4 43.3 1.0
CB A:ASP534 4.4 39.2 1.0
CE A:KCX703 4.7 47.0 1.0
CD A:GLN768 4.8 46.3 1.0
OE1 A:GLN768 4.9 46.7 1.0
CZ A:ARG533 4.9 48.6 1.0
CA A:MET705 5.0 52.0 1.0

Reference:

J.P.Lopez-Alonso, M.Lazaro, D.Gil-Carton, P.H.Choi, L.Tong, M.Valle. Cryoem Structural Exploration of Catalytically Active Enzyme Pyruvate Carboxylase. Nat Commun V. 13 6185 2022.
ISSN: ESSN 2041-1723
PubMed: 36261450
DOI: 10.1038/S41467-022-33987-2
Page generated: Sun Oct 6 11:14:27 2024

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