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Manganese in PDB 7ym5: Crystal Structure of the Salmonella Effector SSEK1

Protein crystallography data

The structure of Crystal Structure of the Salmonella Effector SSEK1, PDB code: 7ym5 was solved by U.J.Kim, J.B.Park, Y.Yoo, H.S.Cho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.98 / 3.45
Space group P 62 2 2
Cell size a, b, c (Å), α, β, γ (°) 115.995, 115.995, 101.042, 90, 90, 120
R / Rfree (%) 28.3 / 29

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of the Salmonella Effector SSEK1 (pdb code 7ym5). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of the Salmonella Effector SSEK1, PDB code: 7ym5:

Manganese binding site 1 out of 1 in 7ym5

Go back to Manganese Binding Sites List in 7ym5
Manganese binding site 1 out of 1 in the Crystal Structure of the Salmonella Effector SSEK1


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Salmonella Effector SSEK1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:122.1
occ:1.00
O3B A:UDP402 2.0 117.8 1.0
OD1 A:ASN322 2.0 122.9 1.0
O2A A:UDP402 2.0 101.6 1.0
OG A:SER324 2.2 127.7 1.0
OD2 A:ASP225 2.2 114.7 1.0
O A:HOH501 2.3 115.9 1.0
CG A:ASP225 3.2 109.2 1.0
CG A:ASN322 3.2 120.3 1.0
PB A:UDP402 3.2 111.2 1.0
PA A:UDP402 3.3 103.9 1.0
CB A:SER324 3.3 124.2 1.0
OD1 A:ASP225 3.6 116.0 1.0
O3A A:UDP402 3.7 117.5 1.0
O1B A:UDP402 4.0 122.3 1.0
ND2 A:ASN322 4.0 122.6 1.0
N A:SER324 4.1 132.5 1.0
CA A:ASN322 4.1 121.8 1.0
O1A A:UDP402 4.2 123.8 1.0
CA A:SER324 4.2 131.0 1.0
CB A:ASN322 4.3 114.6 1.0
OD2 A:ASP223 4.4 101.6 1.0
O5' A:UDP402 4.4 110.0 1.0
O2B A:UDP402 4.4 115.7 1.0
CB A:ASP225 4.5 104.8 1.0
N A:GLN325 4.5 131.2 1.0
C A:ASN322 4.6 124.8 1.0
C5' A:UDP402 4.7 107.9 1.0
OH A:TYR74 4.7 117.0 1.0
C A:SER324 4.7 135.5 1.0
N A:THR323 4.8 120.4 1.0

Reference:

U.J.Kim, J.B.Park, Y.Yoo, H.S.Cho. Crystal Structure of the Salmonella Effector SSEK1 To Be Published.
Page generated: Sun Aug 17 00:01:29 2025

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