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Manganese in PDB 7wg0: Structure of the Manganese Protoporphyrin IX-Reconstituted CYP102A1 Heme Domain with N-Palmitoyl-L-Phenylalanine

Enzymatic activity of Structure of the Manganese Protoporphyrin IX-Reconstituted CYP102A1 Heme Domain with N-Palmitoyl-L-Phenylalanine

All present enzymatic activity of Structure of the Manganese Protoporphyrin IX-Reconstituted CYP102A1 Heme Domain with N-Palmitoyl-L-Phenylalanine:
1.14.14.1; 1.6.2.4;

Protein crystallography data

The structure of Structure of the Manganese Protoporphyrin IX-Reconstituted CYP102A1 Heme Domain with N-Palmitoyl-L-Phenylalanine, PDB code: 7wg0 was solved by O.Keita, S.Osami, A.Yuichiro, S.Hiroshi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.52 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.78, 127.89, 148.67, 90, 90, 90
R / Rfree (%) 20.8 / 26.7

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of the Manganese Protoporphyrin IX-Reconstituted CYP102A1 Heme Domain with N-Palmitoyl-L-Phenylalanine (pdb code 7wg0). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Structure of the Manganese Protoporphyrin IX-Reconstituted CYP102A1 Heme Domain with N-Palmitoyl-L-Phenylalanine, PDB code: 7wg0:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 7wg0

Go back to Manganese Binding Sites List in 7wg0
Manganese binding site 1 out of 2 in the Structure of the Manganese Protoporphyrin IX-Reconstituted CYP102A1 Heme Domain with N-Palmitoyl-L-Phenylalanine


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of the Manganese Protoporphyrin IX-Reconstituted CYP102A1 Heme Domain with N-Palmitoyl-L-Phenylalanine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn502

b:24.8
occ:1.00
MN A:MNH502 0.0 24.8 1.0
NA A:MNH502 2.1 26.8 1.0
ND A:MNH502 2.1 26.5 1.0
NC A:MNH502 2.1 26.9 1.0
NB A:MNH502 2.1 26.3 1.0
SG A:CYS400 2.3 24.6 1.0
C4B A:MNH502 3.1 26.4 1.0
C1C A:MNH502 3.1 26.5 1.0
C1A A:MNH502 3.1 26.1 1.0
C1B A:MNH502 3.1 26.6 1.0
C4C A:MNH502 3.1 26.4 1.0
C4D A:MNH502 3.1 26.4 1.0
C1D A:MNH502 3.1 26.4 1.0
C4A A:MNH502 3.2 26.3 1.0
CB A:CYS400 3.2 25.7 1.0
CHC A:MNH502 3.4 27.0 1.0
CHA A:MNH502 3.5 26.6 1.0
CHB A:MNH502 3.5 26.7 1.0
CHD A:MNH502 3.5 26.3 1.0
O A:HOH745 3.6 41.0 1.0
CA A:CYS400 3.9 25.6 1.0
C3C A:MNH502 4.3 26.9 1.0
C2C A:MNH502 4.3 27.1 1.0
C3B A:MNH502 4.3 26.6 1.0
C2B A:MNH502 4.4 26.8 1.0
C2A A:MNH502 4.4 27.2 1.0
C3D A:MNH502 4.4 26.9 1.0
C2D A:MNH502 4.4 27.1 1.0
C3A A:MNH502 4.4 27.2 1.0
CD A:PRO401 4.7 25.6 1.0
CE2 A:PHE87 4.7 28.1 1.0
C A:CYS400 4.8 25.2 1.0
CD1 A:PHE393 4.9 25.7 1.0
N A:GLY402 4.9 26.1 1.0
N A:PRO401 5.0 25.3 1.0

Manganese binding site 2 out of 2 in 7wg0

Go back to Manganese Binding Sites List in 7wg0
Manganese binding site 2 out of 2 in the Structure of the Manganese Protoporphyrin IX-Reconstituted CYP102A1 Heme Domain with N-Palmitoyl-L-Phenylalanine


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of the Manganese Protoporphyrin IX-Reconstituted CYP102A1 Heme Domain with N-Palmitoyl-L-Phenylalanine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn502

b:20.0
occ:1.00
MN B:MNH502 0.0 20.0 1.0
NB B:MNH502 2.0 21.0 1.0
ND B:MNH502 2.1 20.5 1.0
NA B:MNH502 2.1 21.1 1.0
NC B:MNH502 2.1 20.8 1.0
SG B:CYS400 2.4 19.5 1.0
C4B B:MNH502 3.0 21.5 1.0
C1C B:MNH502 3.0 20.7 1.0
C1B B:MNH502 3.1 21.4 1.0
C4A B:MNH502 3.1 20.8 1.0
C4C B:MNH502 3.1 20.6 1.0
C4D B:MNH502 3.2 20.0 1.0
C1A B:MNH502 3.2 20.5 1.0
C1D B:MNH502 3.2 20.3 1.0
CB B:CYS400 3.3 20.7 1.0
CHC B:MNH502 3.4 21.4 1.0
CHB B:MNH502 3.5 21.6 1.0
CHA B:MNH502 3.6 20.1 1.0
CHD B:MNH502 3.6 20.6 1.0
O B:HOH698 3.6 44.4 1.0
CA B:CYS400 3.9 21.2 1.0
C2C B:MNH502 4.3 20.8 1.0
C3C B:MNH502 4.3 21.2 1.0
C3B B:MNH502 4.3 21.8 1.0
C2B B:MNH502 4.4 21.6 1.0
C3A B:MNH502 4.4 20.9 1.0
C3D B:MNH502 4.4 20.0 1.0
C2D B:MNH502 4.5 20.5 1.0
C2A B:MNH502 4.5 20.6 1.0
O B:ALA264 4.6 27.8 1.0
CD B:PRO401 4.7 21.5 1.0
CE2 B:PHE87 4.8 30.4 1.0
CD1 B:PHE393 4.8 24.3 1.0
C B:CYS400 4.9 21.9 1.0
N B:GLY402 5.0 23.8 1.0

Reference:

O.Keita, S.Osami, A.Yuichiro, S.Hiroshi. Structure of the Manganese Protoporphyrin IX-Reconstituted CYP102A1 Heme Domain with N-Palmitoyl-L-Phenylalanine To Be Published.
Page generated: Sat Aug 16 23:55:49 2025

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