Manganese in PDB 7s0z: Structures of Tcdb in Complex with R-Ras

The structure of Structures of Tcdb in Complex with R-Ras, PDB code: 7s0z was solved by L.Zheng, J.Rongsheng, C.Peng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	76.02 / 2.34
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	76.308, 112.112, 101.571, 90, 95.89, 90
R / Rfree (%)	20.1 / 24.1

The structure of Structures of Tcdb in Complex with R-Ras also contains other interesting chemical elements:

Magnesium

(Mg)

5 atoms

The binding sites of Manganese atom in the Structures of Tcdb in Complex with R-Ras (pdb code 7s0z). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Structures of Tcdb in Complex with R-Ras, PDB code: 7s0z:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Structures of Tcdb in Complex with R-Ras


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structures of Tcdb in Complex with R-Ras within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn613 b:33.4 occ:1.00 OE2 B:GLU516 2.1 32.8 1.0 O2A B:UDP601 2.1 32.9 1.0 OD2 B:ASP288 2.2 30.2 1.0 O3B B:UDP601 2.2 28.6 1.0 O B:HOH721 2.2 25.2 1.0 O B:HOH719 2.3 33.6 1.0 CG B:ASP288 3.1 31.4 1.0 PB B:UDP601 3.1 28.4 1.0 PA B:UDP601 3.3 30.1 1.0 CD B:GLU516 3.3 32.7 1.0 OD1 B:ASP288 3.4 29.7 1.0 O2B B:UDP601 3.4 29.5 1.0 O3A B:UDP601 3.6 30.4 1.0 O B:HOH713 3.8 25.6 1.0 O B:HOH825 3.8 33.1 1.0 OE1 B:GLU516 3.9 33.2 1.0 O1A B:UDP601 4.0 30.9 1.0 OD2 B:ASP286 4.0 33.4 1.0 O B:HOH738 4.0 32.9 1.0 NE2 B:GLN386 4.1 26.9 1.0 O B:GLU516 4.2 36.0 1.0 CA B:GLU516 4.2 34.7 1.0 O6 B:GLC616 4.4 26.8 0.7 CG B:GLU516 4.4 33.5 1.0 CB B:ASP288 4.5 31.8 1.0 CB B:GLU516 4.5 33.9 1.0 O5' B:UDP601 4.5 31.8 1.0 O1B B:UDP601 4.5 28.8 1.0 C B:GLU516 4.7 35.9 1.0 CG B:ASP286 4.8 32.9 1.0 CB B:ASP286 4.9 32.8 1.0 C5' B:UDP601 4.9 31.9 1.0

Manganese binding site 2 out of 2 in the Structures of Tcdb in Complex with R-Ras


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structures of Tcdb in Complex with R-Ras within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn618 b:29.4 occ:1.00 O3B A:UDP601 2.0 27.0 1.0 O1A A:UDP601 2.1 27.7 1.0 O A:HOH755 2.2 28.7 1.0 OD2 A:ASP288 2.2 29.0 1.0 OE2 A:GLU516 2.3 25.0 1.0 O A:HOH727 2.6 36.2 1.0 PB A:UDP601 3.1 28.6 1.0 CG A:ASP288 3.2 29.1 1.0 PA A:UDP601 3.3 28.7 1.0 CD A:GLU516 3.5 26.9 1.0 O2B A:UDP601 3.5 28.7 1.0 OD1 A:ASP288 3.5 28.8 1.0 O3A A:UDP601 3.6 28.6 1.0 O A:HOH754 3.7 26.3 1.0 MG A:MG620 3.9 39.7 1.0 NE2 A:GLN386 3.9 27.8 1.0 O2A A:UDP601 4.0 29.2 1.0 OE1 A:GLU516 4.1 27.3 1.0 O6 A:GLC623 4.1 26.2 0.7 O A:GLU516 4.2 29.3 1.0 CA A:GLU516 4.2 29.9 1.0 MG A:MG619 4.2 39.3 1.0 OD2 A:ASP286 4.3 30.3 1.0 O1B A:UDP601 4.4 27.1 1.0 CB A:ASP288 4.5 28.7 1.0 CG A:GLU516 4.6 27.8 1.0 O5' A:UDP601 4.6 29.0 1.0 CB A:GLU516 4.6 28.8 1.0 C A:GLU516 4.7 29.6 1.0 O A:HOH796 4.9 42.1 1.0 C5' A:UDP601 5.0 29.5 1.0

L.Zheng, J.Rongsheng, C.Peng. Structures of Tcdb in Complex with R-Ras To Be Published.