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Manganese in PDB 7pda: Crystal Structure of Phenazine 1-Carboxylic Acid Decarboxylase From Mycobacterium Fortuitum

Protein crystallography data

The structure of Crystal Structure of Phenazine 1-Carboxylic Acid Decarboxylase From Mycobacterium Fortuitum, PDB code: 7pda was solved by D.Gahloth, D.Leys, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.12 / 2.65
Space group P 3 1 2
Cell size a, b, c (Å), α, β, γ (°) 124.696, 124.696, 68.846, 90, 90, 120
R / Rfree (%) 18.4 / 25.8

Other elements in 7pda:

The structure of Crystal Structure of Phenazine 1-Carboxylic Acid Decarboxylase From Mycobacterium Fortuitum also contains other interesting chemical elements:

Sodium (Na) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Phenazine 1-Carboxylic Acid Decarboxylase From Mycobacterium Fortuitum (pdb code 7pda). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Phenazine 1-Carboxylic Acid Decarboxylase From Mycobacterium Fortuitum, PDB code: 7pda:

Manganese binding site 1 out of 1 in 7pda

Go back to Manganese Binding Sites List in 7pda
Manganese binding site 1 out of 1 in the Crystal Structure of Phenazine 1-Carboxylic Acid Decarboxylase From Mycobacterium Fortuitum


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Phenazine 1-Carboxylic Acid Decarboxylase From Mycobacterium Fortuitum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn501

b:95.6
occ:1.00
OD1 A:ASN160 2.2 91.3 1.0
OE1 A:GLU224 2.3 89.9 1.0
O2P A:4LU502 2.7 83.4 0.9
ND1 A:HIS183 2.9 99.7 1.0
CD A:GLU224 3.1 90.7 1.0
OE2 A:GLU224 3.2 90.1 1.0
CG A:ASN160 3.2 89.6 1.0
O3P A:4LU502 3.3 84.7 0.9
P A:4LU502 3.5 80.1 0.9
O A:ALA218 3.7 91.5 1.0
NA A:NA503 3.7 60.6 1.0
ND2 A:ASN160 3.7 86.4 1.0
CG A:HIS183 3.8 98.9 1.0
CE1 A:HIS183 3.8 99.9 1.0
CB A:HIS183 3.9 97.3 1.0
O A:PRO219 4.2 95.6 1.0
O A:VAL222 4.3 101.9 1.0
CZ2 A:TRP158 4.4 104.7 1.0
CB A:ALA218 4.4 94.5 1.0
O1P A:4LU502 4.5 80.4 0.9
C A:ALA218 4.5 92.2 1.0
CB A:ASN160 4.5 89.8 1.0
CG A:GLU224 4.5 89.3 1.0
N A:ALA218 4.7 92.6 1.0
O5' A:4LU502 4.8 77.4 0.9
O A:VAL161 4.8 76.2 1.0
CA A:ALA218 4.8 92.6 1.0
CD2 A:HIS183 4.9 100.4 1.0
NE2 A:HIS183 4.9 101.2 1.0

Reference:

D.Gahloth, D.Leys. Crystal Structure of Phenazine 1-Carboxylic Acid Decarboxylase From Mycobacterium Fortuitum To Be Published.
Page generated: Sat Aug 16 23:30:41 2025

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