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Manganese in PDB 7nf3: Structure of A. Niger Fdc T395M Variant (Anfdci) in Complex with Prfmn

Enzymatic activity of Structure of A. Niger Fdc T395M Variant (Anfdci) in Complex with Prfmn

All present enzymatic activity of Structure of A. Niger Fdc T395M Variant (Anfdci) in Complex with Prfmn:
4.1.1.102;

Protein crystallography data

The structure of Structure of A. Niger Fdc T395M Variant (Anfdci) in Complex with Prfmn, PDB code: 7nf3 was solved by A.Saaret, D.Leys, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.09 / 1.10
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.91, 63.85, 87.82, 90, 90, 90
R / Rfree (%) 15.8 / 17.2

Other elements in 7nf3:

The structure of Structure of A. Niger Fdc T395M Variant (Anfdci) in Complex with Prfmn also contains other interesting chemical elements:

Potassium (K) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of A. Niger Fdc T395M Variant (Anfdci) in Complex with Prfmn (pdb code 7nf3). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Structure of A. Niger Fdc T395M Variant (Anfdci) in Complex with Prfmn, PDB code: 7nf3:

Manganese binding site 1 out of 1 in 7nf3

Go back to Manganese Binding Sites List in 7nf3
Manganese binding site 1 out of 1 in the Structure of A. Niger Fdc T395M Variant (Anfdci) in Complex with Prfmn


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of A. Niger Fdc T395M Variant (Anfdci) in Complex with Prfmn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn604

b:6.8
occ:0.80
 OE2 A:GLU233 2.1 7.2 1.0
O2P A:4LU603 2.1 6.5 1.0
OD1 A:ASN168 2.1 7.1 1.0
O A:HOH726 2.2 7.3 1.0
O A:HOH795 2.2 7.7 1.0
ND1 A:HIS191 2.3 7.2 1.0
CG A:ASN168 3.1 6.5 1.0
CE1 A:HIS191 3.1 7.4 1.0
CD A:GLU233 3.2 7.0 1.0
P A:4LU603 3.4 6.4 1.0
CG A:HIS191 3.4 6.8 1.0
ND2 A:ASN168 3.5 7.0 1.0
OE1 A:GLU233 3.5 7.5 1.0
O1P A:4LU603 3.6 8.0 1.0
K A:K601 3.7 7.5 1.0
CB A:HIS191 3.8 6.7 1.0
O3P A:4LU603 4.2 7.1 1.0
O A:ILE227 4.3 7.9 1.0
CZ2 A:TRP166 4.3 9.0 1.0
NE2 A:HIS191 4.4 7.7 1.0
CG1 A:ILE227 4.4 9.6 1.0
CB A:ASN168 4.4 6.8 1.0
CD2 A:HIS191 4.4 8.0 1.0
O5' A:4LU603 4.5 6.7 1.0
CG A:GLU233 4.5 7.6 1.0
O A:VAL231 4.5 8.9 1.0
O A:TRP169 4.6 6.9 1.0
NE1 A:TRP166 4.6 8.8 1.0
O A:PRO228 4.7 8.6 1.0
CE2 A:TRP166 4.9 8.4 1.0
CA A:ASN168 5.0 6.7 1.0

Reference:

A.Saaret, B.Villiers, F.Stricher, M.Anissimova, M.Cadillon, R.Spiess, S.Hay, D.Leys. Directed Evolution of Prenylated Fmn-Dependent Fdc Supports Efficient in Vivo Isobutene Production Nat Commun 2021.
ISSN: ESSN 2041-1723
Page generated: Sat Aug 16 23:25:32 2025

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