Atomistry » Manganese » PDB 7fqa-7kst » 7k5k
Atomistry »
  Manganese »
    PDB 7fqa-7kst »
      7k5k »

Manganese in PDB 7k5k: Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17

Enzymatic activity of Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17

All present enzymatic activity of Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17:
3.4.11.1;

Manganese Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Manganese atom in the Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17 (pdb code 7k5k). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 12 binding sites of Manganese where determined in the Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17, PDB code: 7k5k:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Manganese binding site 1 out of 12 in 7k5k

Go back to Manganese Binding Sites List in 7k5k
Manganese binding site 1 out of 12 in the Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn702

b:36.3
occ:1.00
O A:ASP475 1.7 28.9 1.0
OD1 A:ASP475 1.8 28.9 1.0
OE1 A:GLU477 2.5 25.0 1.0
OD2 A:ASP395 2.7 28.1 1.0
C A:ASP475 2.8 28.9 1.0
CG A:ASP475 2.8 28.9 1.0
CA A:ASP475 3.3 28.9 1.0
OD1 A:ASP395 3.4 28.1 1.0
CG A:ASP395 3.4 28.1 1.0
MN A:MN703 3.5 38.1 1.0
CB A:ASP475 3.5 28.9 1.0
CD A:GLU477 3.6 25.0 1.0
OD2 A:ASP475 3.7 28.9 1.0
OE2 A:GLU477 3.9 25.0 1.0
N A:ALA476 3.9 24.0 1.0
CE A:LYS402 4.2 31.5 1.0
O2 A:CO3701 4.3 23.0 1.0
N A:GLU477 4.3 25.0 1.0
NZ A:LYS402 4.4 31.5 1.0
CA A:ALA476 4.4 24.0 1.0
ND2 A:ASN448 4.5 26.1 1.0
N A:ASP475 4.7 28.9 1.0
CA A:GLY397 4.8 25.3 1.0
CG A:GLU477 4.8 25.0 1.0
CB A:ASP395 4.9 28.1 1.0
O A:THR474 4.9 24.1 1.0
C A:ALA476 5.0 24.0 1.0

Manganese binding site 2 out of 12 in 7k5k

Go back to Manganese Binding Sites List in 7k5k
Manganese binding site 2 out of 12 in the Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn703

b:38.1
occ:1.00
NZ A:LYS390 1.8 23.2 1.0
OD2 A:ASP415 2.2 26.8 1.0
OD2 A:ASP395 2.5 28.1 1.0
OE2 A:GLU477 2.6 25.0 1.0
CG A:ASP415 3.2 26.8 1.0
CE A:LYS390 3.2 23.2 1.0
OD1 A:ASP415 3.4 26.8 1.0
CD A:GLU477 3.4 25.0 1.0
MN A:MN702 3.5 36.3 1.0
CG A:ASP395 3.5 28.1 1.0
OE1 A:GLU477 3.5 25.0 1.0
O2 A:CO3701 3.7 23.0 1.0
CB A:ASP395 4.1 28.1 1.0
O A:THR502 4.2 23.8 1.0
CD A:LYS390 4.3 23.2 1.0
OD1 A:ASP395 4.4 28.1 1.0
CB A:ASP415 4.5 26.8 1.0
O A:LEU503 4.6 24.4 1.0
O A:ASP475 4.6 28.9 1.0
CG A:GLU477 4.9 25.0 1.0
N A:GLY478 4.9 23.5 1.0
C A:CO3701 4.9 23.0 1.0

Manganese binding site 3 out of 12 in 7k5k

Go back to Manganese Binding Sites List in 7k5k
Manganese binding site 3 out of 12 in the Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn702

b:38.4
occ:1.00
NZ B:LYS390 2.0 24.1 1.0
OD2 B:ASP415 2.1 26.9 1.0
OD2 B:ASP395 2.8 27.9 1.0
OE2 B:GLU477 2.8 24.6 1.0
CG B:ASP415 2.9 26.9 1.0
CE B:LYS390 3.1 24.1 1.0
OD1 B:ASP415 3.1 26.9 1.0
MN B:MN703 3.5 36.4 1.0
O2 B:CO3701 3.6 23.4 1.0
CG B:ASP395 3.7 27.9 1.0
CD B:GLU477 3.7 24.6 1.0
OE1 B:GLU477 3.9 24.6 1.0
O B:THR502 4.0 22.7 1.0
CB B:ASP395 4.1 27.9 1.0
CB B:ASP415 4.4 26.9 1.0
CD B:LYS390 4.4 24.1 1.0
OD1 B:ASP395 4.6 27.9 1.0
O B:LEU503 4.6 24.1 1.0
C B:CO3701 4.7 23.4 1.0
O B:ASP475 4.8 28.6 1.0

Manganese binding site 4 out of 12 in 7k5k

Go back to Manganese Binding Sites List in 7k5k
Manganese binding site 4 out of 12 in the Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn703

b:36.4
occ:1.00
O B:ASP475 1.8 28.6 1.0
OD1 B:ASP475 2.0 28.6 1.0
OD2 B:ASP395 2.5 27.9 1.0
OE1 B:GLU477 2.6 24.6 1.0
C B:ASP475 2.9 28.6 1.0
CG B:ASP475 3.0 28.6 1.0
CG B:ASP395 3.3 27.9 1.0
MN B:MN702 3.5 38.4 1.0
CA B:ASP475 3.5 28.6 1.0
OD1 B:ASP395 3.5 27.9 1.0
CD B:GLU477 3.5 24.6 1.0
OE2 B:GLU477 3.7 24.6 1.0
CB B:ASP475 3.8 28.6 1.0
OD2 B:ASP475 3.9 28.6 1.0
N B:ALA476 4.1 24.6 1.0
NZ B:LYS402 4.1 33.0 1.0
O2 B:CO3701 4.2 23.4 1.0
CE B:LYS402 4.4 33.0 1.0
N B:GLU477 4.4 24.6 1.0
O1 B:CO3701 4.5 23.4 1.0
CA B:ALA476 4.5 24.6 1.0
C B:CO3701 4.7 23.4 1.0
ND2 B:ASN448 4.7 27.2 1.0
CB B:ASP395 4.7 27.9 1.0
N B:ASP475 4.9 28.6 1.0
CG B:GLU477 4.9 24.6 1.0
OD2 B:ASP415 5.0 26.9 1.0
CA B:GLY397 5.0 26.0 1.0

Manganese binding site 5 out of 12 in 7k5k

Go back to Manganese Binding Sites List in 7k5k
Manganese binding site 5 out of 12 in the Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn702

b:37.4
occ:1.00
NZ C:LYS390 2.1 22.4 1.0
OD2 C:ASP415 2.2 27.2 1.0
OD2 C:ASP395 2.4 27.3 1.0
OE2 C:GLU477 2.6 24.8 1.0
CG C:ASP415 3.1 27.2 1.0
CE C:LYS390 3.2 22.4 1.0
OD1 C:ASP415 3.3 27.2 1.0
CG C:ASP395 3.4 27.3 1.0
MN C:MN703 3.5 37.9 1.0
CD C:GLU477 3.5 24.8 1.0
O3 C:CO3701 3.6 23.4 1.0
OE1 C:GLU477 3.7 24.8 1.0
CB C:ASP395 4.0 27.3 1.0
O C:THR502 4.1 23.4 1.0
OD1 C:ASP395 4.2 27.3 1.0
CD C:LYS390 4.5 22.4 1.0
CB C:ASP415 4.5 27.2 1.0
O C:LEU503 4.6 24.2 1.0
O C:ASP475 4.7 27.6 1.0
C C:CO3701 4.8 23.4 1.0
CG C:GLU477 4.9 24.8 1.0
N C:GLY478 5.0 24.2 1.0

Manganese binding site 6 out of 12 in 7k5k

Go back to Manganese Binding Sites List in 7k5k
Manganese binding site 6 out of 12 in the Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn703

b:37.9
occ:1.00
O C:ASP475 1.8 27.6 1.0
OD1 C:ASP475 1.8 27.6 1.0
OE1 C:GLU477 2.5 24.8 1.0
OD2 C:ASP395 2.7 27.3 1.0
C C:ASP475 2.8 27.6 1.0
CG C:ASP475 2.8 27.6 1.0
CA C:ASP475 3.3 27.6 1.0
OD1 C:ASP395 3.4 27.3 1.0
CG C:ASP395 3.4 27.3 1.0
CD C:GLU477 3.4 24.8 1.0
MN C:MN702 3.5 37.4 1.0
CB C:ASP475 3.5 27.6 1.0
OE2 C:GLU477 3.7 24.8 1.0
OD2 C:ASP475 3.8 27.6 1.0
N C:ALA476 4.0 24.3 1.0
O3 C:CO3701 4.3 23.4 1.0
CE C:LYS402 4.3 30.7 1.0
N C:GLU477 4.3 24.8 1.0
NZ C:LYS402 4.4 30.7 1.0
CA C:ALA476 4.4 24.3 1.0
ND2 C:ASN448 4.6 26.1 1.0
O1 C:CO3701 4.6 23.4 1.0
N C:ASP475 4.7 27.6 1.0
CG C:GLU477 4.8 24.8 1.0
C C:CO3701 4.8 23.4 1.0
CB C:ASP395 4.9 27.3 1.0
CA C:GLY397 4.9 25.4 1.0
C C:ALA476 4.9 24.3 1.0
O C:THR474 5.0 22.9 1.0

Manganese binding site 7 out of 12 in 7k5k

Go back to Manganese Binding Sites List in 7k5k
Manganese binding site 7 out of 12 in the Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn702

b:38.5
occ:1.00
NZ D:LYS390 2.1 22.3 1.0
OD2 D:ASP415 2.1 26.6 1.0
OD2 D:ASP395 2.3 28.4 1.0
OE2 D:GLU477 2.6 25.1 1.0
CG D:ASP415 3.1 26.6 1.0
CE D:LYS390 3.2 22.3 1.0
CG D:ASP395 3.3 28.4 1.0
OD1 D:ASP415 3.4 26.6 1.0
MN D:MN703 3.5 38.4 1.0
CD D:GLU477 3.5 25.1 1.0
O1 D:CO3701 3.6 23.9 1.0
OE1 D:GLU477 3.7 25.1 1.0
CB D:ASP395 4.0 28.4 1.0
O D:THR502 4.1 23.0 1.0
OD1 D:ASP395 4.2 28.4 1.0
CB D:ASP415 4.4 26.6 1.0
CD D:LYS390 4.5 22.3 1.0
O D:LEU503 4.6 23.9 1.0
O D:ASP475 4.7 27.8 1.0
C D:CO3701 4.8 23.9 1.0
CG D:GLU477 4.9 25.1 1.0
N D:GLY478 5.0 24.4 1.0

Manganese binding site 8 out of 12 in 7k5k

Go back to Manganese Binding Sites List in 7k5k
Manganese binding site 8 out of 12 in the Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn703

b:38.4
occ:1.00
O D:ASP475 1.8 27.8 1.0
OD1 D:ASP475 1.8 27.8 1.0
OE1 D:GLU477 2.5 25.1 1.0
OD2 D:ASP395 2.7 28.4 1.0
C D:ASP475 2.8 27.8 1.0
CG D:ASP475 2.8 27.8 1.0
CA D:ASP475 3.3 27.8 1.0
OD1 D:ASP395 3.3 28.4 1.0
CG D:ASP395 3.4 28.4 1.0
CD D:GLU477 3.4 25.1 1.0
MN D:MN702 3.5 38.5 1.0
CB D:ASP475 3.5 27.8 1.0
OE2 D:GLU477 3.7 25.1 1.0
OD2 D:ASP475 3.8 27.8 1.0
N D:ALA476 4.0 25.0 1.0
O1 D:CO3701 4.3 23.9 1.0
CE D:LYS402 4.3 31.4 1.0
N D:GLU477 4.3 25.1 1.0
NZ D:LYS402 4.4 31.4 1.0
CA D:ALA476 4.4 25.0 1.0
ND2 D:ASN448 4.6 26.4 1.0
O3 D:CO3701 4.6 23.9 1.0
N D:ASP475 4.7 27.8 1.0
CG D:GLU477 4.8 25.1 1.0
C D:CO3701 4.8 23.9 1.0
CA D:GLY397 4.9 25.8 1.0
CB D:ASP395 4.9 28.4 1.0
C D:ALA476 4.9 25.0 1.0
O D:THR474 5.0 23.7 1.0

Manganese binding site 9 out of 12 in 7k5k

Go back to Manganese Binding Sites List in 7k5k
Manganese binding site 9 out of 12 in the Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 9 of Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn702

b:37.4
occ:1.00
O E:ASP475 1.7 28.3 1.0
OD1 E:ASP475 1.8 28.3 1.0
OE1 E:GLU477 2.5 25.4 1.0
OD2 E:ASP395 2.7 28.6 1.0
C E:ASP475 2.8 28.3 1.0
CG E:ASP475 2.8 28.3 1.0
CA E:ASP475 3.3 28.3 1.0
OD1 E:ASP395 3.4 28.6 1.0
CG E:ASP395 3.4 28.6 1.0
MN E:MN703 3.5 38.7 1.0
CB E:ASP475 3.5 28.3 1.0
CD E:GLU477 3.6 25.4 1.0
OD2 E:ASP475 3.7 28.3 1.0
OE2 E:GLU477 3.9 25.4 1.0
N E:ALA476 3.9 24.2 1.0
CE E:LYS402 4.2 32.3 1.0
O1 E:CO3701 4.3 23.6 1.0
N E:GLU477 4.3 25.4 1.0
NZ E:LYS402 4.4 32.3 1.0
CA E:ALA476 4.4 24.2 1.0
ND2 E:ASN448 4.5 27.0 1.0
N E:ASP475 4.7 28.3 1.0
CA E:GLY397 4.8 26.1 1.0
CG E:GLU477 4.8 25.4 1.0
CB E:ASP395 4.9 28.6 1.0
O E:THR474 4.9 24.9 1.0
C E:ALA476 5.0 24.2 1.0

Manganese binding site 10 out of 12 in 7k5k

Go back to Manganese Binding Sites List in 7k5k
Manganese binding site 10 out of 12 in the Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 10 of Plasmodium Vivax M17 Leucyl Aminopeptidase Pv-M17 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn703

b:38.7
occ:1.00
NZ E:LYS390 1.8 23.1 1.0
OD2 E:ASP415 2.2 27.3 1.0
OD2 E:ASP395 2.5 28.6 1.0
OE2 E:GLU477 2.6 25.4 1.0
CG E:ASP415 3.2 27.3 1.0
CE E:LYS390 3.2 23.1 1.0
OD1 E:ASP415 3.4 27.3 1.0
CD E:GLU477 3.4 25.4 1.0
MN E:MN702 3.5 37.4 1.0
CG E:ASP395 3.5 28.6 1.0
OE1 E:GLU477 3.5 25.4 1.0
O1 E:CO3701 3.7 23.6 1.0
CB E:ASP395 4.1 28.6 1.0
O E:THR502 4.2 23.5 1.0
CD E:LYS390 4.3 23.1 1.0
OD1 E:ASP395 4.4 28.6 1.0
CB E:ASP415 4.5 27.3 1.0
O E:LEU503 4.6 24.6 1.0
O E:ASP475 4.6 28.3 1.0
CG E:GLU477 4.9 25.4 1.0
N E:GLY478 4.9 23.6 1.0
C E:CO3701 4.9 23.6 1.0

Reference:

T.R.Malcolm, M.J.Belousoff, H.Venugopal, N.A.Borg, N.Drinkwater, S.C.Atkinson, S.Mcgowan. Active Site Metals Mediate An Oligomeric Equilibrium in /Plasmodium/ M17 Aminopeptidases J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
Page generated: Sun Oct 6 08:51:21 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy