Manganese in PDB 7e9w: The Crystal Structure of D-Psicose-3-Epimerase From Biortus.

All present enzymatic activity of The Crystal Structure of D-Psicose-3-Epimerase From Biortus.:
5.1.3.30;

The structure of The Crystal Structure of D-Psicose-3-Epimerase From Biortus., PDB code: 7e9w was solved by F.Wang, C.Xu, J.Qi, M.Zhang, F.Tian, M.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.61 / 2.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	79.134, 116.083, 91.817, 90, 105.08, 90
R / Rfree (%)	17.4 / 20.6

The binding sites of Manganese atom in the The Crystal Structure of D-Psicose-3-Epimerase From Biortus. (pdb code 7e9w). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the The Crystal Structure of D-Psicose-3-Epimerase From Biortus., PDB code: 7e9w:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in the The Crystal Structure of D-Psicose-3-Epimerase From Biortus.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Crystal Structure of D-Psicose-3-Epimerase From Biortus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn301 b:49.1 occ:0.70 O2 A:GOL304 2.0 58.6 1.0 OE1 A:GLU244 2.1 42.4 1.0 OD2 A:ASP183 2.1 32.9 1.0 OE2 A:GLU150 2.2 42.3 1.0 ND1 A:HIS209 2.8 37.8 1.0 CD A:GLU244 3.2 38.7 1.0 C2 A:GOL304 3.2 62.3 1.0 CD A:GLU150 3.3 38.0 1.0 CG A:ASP183 3.4 29.0 1.0 C1 A:GOL304 3.5 65.1 1.0 OE2 A:GLU244 3.6 42.2 1.0 CG A:HIS209 3.7 33.8 1.0 CE1 A:HIS209 3.7 37.5 1.0 OE1 A:GLU150 3.8 40.3 1.0 CB A:HIS209 3.8 31.3 1.0 CB A:ASP183 4.0 27.5 1.0 NH1 A:ARG215 4.1 31.9 1.0 NE2 A:HIS186 4.3 25.4 1.0 CD2 A:HIS186 4.3 25.7 1.0 OD1 A:ASP183 4.3 29.0 1.0 O A:HOH436 4.4 47.8 1.0 CE A:MET181 4.4 38.4 1.0 CG A:GLU244 4.4 35.5 1.0 C3 A:GOL304 4.4 60.0 1.0 CG A:GLU150 4.6 34.4 1.0 O A:HOH565 4.7 53.1 1.0 CB A:GLU244 4.8 31.2 1.0 O3 A:GOL304 4.8 57.1 1.0 CD2 A:HIS209 4.8 36.3 1.0 NE2 A:HIS209 4.8 37.3 1.0 O1 A:GOL304 5.0 65.0 1.0

Manganese binding site 2 out of 4 in the The Crystal Structure of D-Psicose-3-Epimerase From Biortus.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The Crystal Structure of D-Psicose-3-Epimerase From Biortus. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn301 b:49.3 occ:0.70 O2 B:GOL304 2.0 61.8 1.0 OE1 B:GLU244 2.1 46.1 1.0 OD2 B:ASP183 2.1 34.7 1.0 OE2 B:GLU150 2.2 43.9 1.0 ND1 B:HIS209 2.8 36.5 1.0 CD B:GLU244 2.9 42.4 1.0 OE2 B:GLU244 3.1 46.6 1.0 CD B:GLU150 3.2 42.6 1.0 C2 B:GOL304 3.3 65.4 1.0 CG B:ASP183 3.3 30.7 1.0 OE1 B:GLU150 3.6 44.4 1.0 CG B:HIS209 3.7 31.5 1.0 CE1 B:HIS209 3.7 34.6 1.0 CB B:HIS209 3.8 29.7 1.0 C1 B:GOL304 4.0 67.3 1.0 CB B:ASP183 4.0 29.5 1.0 NH1 B:ARG215 4.1 31.9 1.0 O1 B:GOL304 4.3 70.7 1.0 OD1 B:ASP183 4.3 31.2 1.0 CG B:GLU244 4.3 39.7 1.0 CE B:MET181 4.3 37.4 1.0 C3 B:GOL304 4.4 60.8 1.0 CD2 B:HIS186 4.4 26.7 1.0 NE2 B:HIS186 4.5 26.2 1.0 CG B:GLU150 4.5 39.4 1.0 CB B:GLU244 4.7 36.0 1.0 CD2 B:HIS209 4.9 34.0 1.0 NE2 B:HIS209 4.9 34.6 1.0

Manganese binding site 3 out of 4 in the The Crystal Structure of D-Psicose-3-Epimerase From Biortus.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of The Crystal Structure of D-Psicose-3-Epimerase From Biortus. within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn301 b:48.0 occ:0.70 O2 C:GOL304 2.0 56.6 1.0 OE1 C:GLU244 2.1 45.5 1.0 OD2 C:ASP183 2.1 36.8 1.0 OE2 C:GLU150 2.2 43.7 1.0 O C:HOH480 2.8 55.4 1.0 ND1 C:HIS209 2.8 39.1 1.0 CD C:GLU244 3.0 42.8 1.0 CD C:GLU150 3.1 43.7 1.0 OE2 C:GLU244 3.3 46.3 1.0 CG C:ASP183 3.3 31.9 1.0 C2 C:GOL304 3.4 60.1 1.0 OE1 C:GLU150 3.4 45.7 1.0 CG C:HIS209 3.7 35.5 1.0 CE1 C:HIS209 3.8 38.9 1.0 CB C:HIS209 3.8 32.7 1.0 CB C:ASP183 3.9 30.5 1.0 C3 C:GOL304 4.0 64.0 1.0 NH1 C:ARG215 4.1 35.1 1.0 O C:HOH413 4.3 44.7 1.0 CD2 C:HIS186 4.3 31.2 1.0 CE C:MET181 4.3 38.5 1.0 OD1 C:ASP183 4.3 31.9 1.0 NE2 C:HIS186 4.4 29.5 1.0 CG C:GLU244 4.4 39.4 1.0 C1 C:GOL304 4.4 56.9 1.0 CG C:GLU150 4.5 39.2 1.0 O3 C:GOL304 4.8 65.2 1.0 CB C:GLU244 4.8 35.6 1.0 CD2 C:HIS209 4.9 36.4 1.0 NE2 C:HIS209 4.9 38.7 1.0

Manganese binding site 4 out of 4 in the The Crystal Structure of D-Psicose-3-Epimerase From Biortus.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of The Crystal Structure of D-Psicose-3-Epimerase From Biortus. within 5.0Å range: probe atom residue distance (Å) B Occ D:Mn301 b:48.0 occ:0.70 O2 D:GOL304 2.0 60.6 1.0 OE1 D:GLU244 2.1 46.2 1.0 OD2 D:ASP183 2.1 34.8 1.0 OE2 D:GLU150 2.2 44.2 1.0 ND1 D:HIS209 2.8 39.6 1.0 CD D:GLU244 3.0 43.8 1.0 CD D:GLU150 3.2 42.4 1.0 OE2 D:GLU244 3.2 50.5 1.0 CG D:ASP183 3.3 31.5 1.0 C2 D:GOL304 3.4 63.1 1.0 OE1 D:GLU150 3.4 45.4 1.0 CE1 D:HIS209 3.7 39.5 1.0 CG D:HIS209 3.7 36.2 1.0 CB D:HIS209 3.9 32.4 1.0 CB D:ASP183 4.0 30.2 1.0 C3 D:GOL304 4.1 66.2 1.0 NH1 D:ARG215 4.1 29.7 1.0 NE2 D:HIS186 4.3 29.2 1.0 OD1 D:ASP183 4.3 33.2 1.0 CD2 D:HIS186 4.3 28.6 1.0 CG D:GLU244 4.3 42.0 1.0 CE D:MET181 4.3 37.2 1.0 C1 D:GOL304 4.4 61.4 1.0 O D:HOH442 4.5 43.6 1.0 CG D:GLU150 4.5 39.2 1.0 O3 D:GOL304 4.6 64.6 1.0 CB D:GLU244 4.7 37.3 1.0 O D:HOH500 4.8 47.0 1.0 NE2 D:HIS209 4.9 39.1 1.0 CD2 D:HIS209 4.9 38.1 1.0

F.Wang, C.Xu, J.Qi, M.Zhang, F.Tian, M.Wang. The Crystal Structure of D-Psicose-3-Epimerase From Biortus. To Be Published.