Atomistry » Manganese » PDB 7bmf-7d6g » 7bop
Atomistry »
  Manganese »
    PDB 7bmf-7d6g »
      7bop »

Manganese in PDB 7bop: Crystal Structure of Core-Mannan Synthase A (Cmsa/KTR4) From Aspergillus Fumigatus, Mn/Gdp-Form

Protein crystallography data

The structure of Crystal Structure of Core-Mannan Synthase A (Cmsa/KTR4) From Aspergillus Fumigatus, Mn/Gdp-Form, PDB code: 7bop was solved by D.Hira, T.Onoue, T.Oka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.82 / 1.90
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 154.504, 273.006, 186.279, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 18.1

Other elements in 7bop:

The structure of Crystal Structure of Core-Mannan Synthase A (Cmsa/KTR4) From Aspergillus Fumigatus, Mn/Gdp-Form also contains other interesting chemical elements:

Sodium (Na) 7 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Core-Mannan Synthase A (Cmsa/KTR4) From Aspergillus Fumigatus, Mn/Gdp-Form (pdb code 7bop). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 6 binding sites of Manganese where determined in the Crystal Structure of Core-Mannan Synthase A (Cmsa/KTR4) From Aspergillus Fumigatus, Mn/Gdp-Form, PDB code: 7bop:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6;

Manganese binding site 1 out of 6 in 7bop

Go back to Manganese Binding Sites List in 7bop
Manganese binding site 1 out of 6 in the Crystal Structure of Core-Mannan Synthase A (Cmsa/KTR4) From Aspergillus Fumigatus, Mn/Gdp-Form


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Core-Mannan Synthase A (Cmsa/KTR4) From Aspergillus Fumigatus, Mn/Gdp-Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:44.0
occ:1.00
O2B A:GDP402 1.9 47.7 1.0
O2A A:GDP402 2.0 48.7 1.0
OE2 A:GLU205 2.0 40.7 1.0
NE2 A:HIS354 2.1 37.9 1.0
O A:HOH730 2.3 43.1 1.0
O A:HOH600 2.4 41.6 1.0
CE1 A:HIS354 3.0 36.9 1.0
PB A:GDP402 3.2 50.8 1.0
CD2 A:HIS354 3.2 37.5 1.0
CD A:GLU205 3.2 38.7 1.0
PA A:GDP402 3.3 48.1 1.0
O3A A:GDP402 3.7 49.2 1.0
O1B A:GDP402 3.7 50.6 1.0
OE1 A:GLU205 4.0 38.6 1.0
O A:HOH546 4.0 58.2 1.0
ND1 A:HIS354 4.2 36.3 1.0
C5' A:GDP402 4.2 46.6 1.0
O A:HOH647 4.3 52.6 1.0
O5' A:GDP402 4.3 46.0 1.0
CG A:HIS354 4.3 34.4 1.0
CG A:GLU205 4.4 37.3 1.0
CB A:GLU205 4.4 35.5 1.0
O3B A:GDP402 4.5 48.8 1.0
O1A A:GDP402 4.5 47.0 1.0
C3' A:GDP402 4.6 45.4 1.0
O A:HOH828 4.7 54.5 1.0
O A:PRO206 4.9 36.3 1.0
C4' A:GDP402 4.9 46.7 1.0
CB A:ASN293 4.9 30.2 1.0

Manganese binding site 2 out of 6 in 7bop

Go back to Manganese Binding Sites List in 7bop
Manganese binding site 2 out of 6 in the Crystal Structure of Core-Mannan Synthase A (Cmsa/KTR4) From Aspergillus Fumigatus, Mn/Gdp-Form


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Core-Mannan Synthase A (Cmsa/KTR4) From Aspergillus Fumigatus, Mn/Gdp-Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn401

b:42.8
occ:1.00
O1B B:GDP402 2.0 46.6 1.0
O2A B:GDP402 2.0 47.3 1.0
OE1 B:GLU205 2.0 42.0 1.0
NE2 B:HIS354 2.1 37.4 1.0
O B:HOH701 2.3 44.8 1.0
O B:HOH537 2.4 44.3 1.0
CE1 B:HIS354 3.0 35.9 1.0
CD2 B:HIS354 3.2 37.0 1.0
CD B:GLU205 3.2 38.0 1.0
PB B:GDP402 3.2 52.1 1.0
PA B:GDP402 3.3 46.1 1.0
O3A B:GDP402 3.7 50.1 1.0
O3B B:GDP402 3.8 55.7 1.0
OE2 B:GLU205 3.9 41.0 1.0
O B:HOH606 3.9 54.0 1.0
ND1 B:HIS354 4.2 35.5 1.0
O B:HOH554 4.3 48.6 1.0
C5' B:GDP402 4.3 45.9 1.0
CG B:HIS354 4.3 34.7 1.0
O5' B:GDP402 4.3 45.8 1.0
O B:HOH529 4.4 52.7 1.0
CG B:GLU205 4.4 36.7 1.0
CB B:GLU205 4.4 34.9 1.0
O1A B:GDP402 4.5 47.6 1.0
O2B B:GDP402 4.5 51.9 1.0
O B:HOH821 4.5 56.5 1.0
C3' B:GDP402 4.6 43.6 1.0
O B:PRO206 4.8 36.4 1.0
C4' B:GDP402 5.0 45.4 1.0
CB B:ASN293 5.0 29.9 1.0

Manganese binding site 3 out of 6 in 7bop

Go back to Manganese Binding Sites List in 7bop
Manganese binding site 3 out of 6 in the Crystal Structure of Core-Mannan Synthase A (Cmsa/KTR4) From Aspergillus Fumigatus, Mn/Gdp-Form


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of Core-Mannan Synthase A (Cmsa/KTR4) From Aspergillus Fumigatus, Mn/Gdp-Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn401

b:45.6
occ:1.00
O2B C:GDP402 1.9 51.0 1.0
O2A C:GDP402 2.0 46.4 1.0
OE2 C:GLU205 2.0 41.8 1.0
O C:HOH510 2.1 42.9 1.0
NE2 C:HIS354 2.1 41.8 1.0
O C:HOH526 2.3 46.7 1.0
CE1 C:HIS354 3.0 39.5 1.0
CD2 C:HIS354 3.2 39.6 1.0
PB C:GDP402 3.2 51.7 1.0
CD C:GLU205 3.3 41.4 1.0
PA C:GDP402 3.3 45.6 1.0
O3A C:GDP402 3.7 50.1 1.0
O3B C:GDP402 3.7 49.7 1.0
OE1 C:GLU205 4.0 44.7 1.0
ND1 C:HIS354 4.2 38.9 1.0
C5' C:GDP402 4.2 43.1 1.0
O5' C:GDP402 4.3 42.4 1.0
CG C:HIS354 4.3 37.3 1.0
O C:HOH505 4.4 49.7 1.0
CG C:GLU205 4.4 39.9 1.0
O1B C:GDP402 4.5 50.9 1.0
O1A C:GDP402 4.5 46.2 1.0
CB C:GLU205 4.5 38.0 1.0
C3' C:GDP402 4.6 42.1 1.0
O C:PRO206 4.8 38.5 1.0
C4' C:GDP402 5.0 42.4 1.0

Manganese binding site 4 out of 6 in 7bop

Go back to Manganese Binding Sites List in 7bop
Manganese binding site 4 out of 6 in the Crystal Structure of Core-Mannan Synthase A (Cmsa/KTR4) From Aspergillus Fumigatus, Mn/Gdp-Form


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structure of Core-Mannan Synthase A (Cmsa/KTR4) From Aspergillus Fumigatus, Mn/Gdp-Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn401

b:44.5
occ:1.00
O2B D:GDP402 1.9 48.5 1.0
OE2 D:GLU205 2.0 42.2 1.0
O1A D:GDP402 2.0 47.9 1.0
NE2 D:HIS354 2.1 37.8 1.0
O D:HOH525 2.3 45.6 1.0
O D:HOH664 2.4 48.9 1.0
CE1 D:HIS354 3.0 37.5 1.0
CD2 D:HIS354 3.2 37.0 1.0
CD D:GLU205 3.2 40.7 1.0
PB D:GDP402 3.2 53.8 1.0
PA D:GDP402 3.3 47.2 1.0
O3A D:GDP402 3.7 50.8 1.0
O3B D:GDP402 3.8 53.4 1.0
OE1 D:GLU205 3.9 41.9 1.0
ND1 D:HIS354 4.2 38.7 1.0
C5' D:GDP402 4.3 47.3 1.0
O5' D:GDP402 4.3 46.5 1.0
O D:HOH528 4.3 45.8 1.0
CG D:HIS354 4.3 36.2 1.0
O D:HOH687 4.4 48.1 1.0
CG D:GLU205 4.4 39.8 1.0
CB D:GLU205 4.4 37.7 1.0
O1B D:GDP402 4.5 50.8 1.0
O2A D:GDP402 4.5 47.8 1.0
C3' D:GDP402 4.6 46.0 1.0
O D:HOH789 4.7 52.2 1.0
O D:PRO206 4.8 39.6 1.0
C4' D:GDP402 5.0 47.6 1.0
CB D:ASN293 5.0 31.4 1.0

Manganese binding site 5 out of 6 in 7bop

Go back to Manganese Binding Sites List in 7bop
Manganese binding site 5 out of 6 in the Crystal Structure of Core-Mannan Synthase A (Cmsa/KTR4) From Aspergillus Fumigatus, Mn/Gdp-Form


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Crystal Structure of Core-Mannan Synthase A (Cmsa/KTR4) From Aspergillus Fumigatus, Mn/Gdp-Form within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn401

b:49.5
occ:1.00
O1B E:GDP402 1.9 54.2 1.0
O1A E:GDP402 1.9 51.3 1.0
OE1 E:GLU205 2.0 43.5 1.0
NE2 E:HIS354 2.1 43.7 1.0
O E:HOH565 2.2 49.8 1.0
O E:HOH555 2.4 50.4 1.0
CE1 E:HIS354 3.0 42.2 1.0
CD2 E:HIS354 3.2 42.5 1.0
PB E:GDP402 3.2 56.7 1.0
CD E:GLU205 3.3 43.5 1.0
PA E:GDP402 3.3 52.1 1.0
O3A E:GDP402 3.7 55.2 1.0
O3B E:GDP402 3.8 52.5 1.0
OE2 E:GLU205 4.0 44.1 1.0
O E:HOH594 4.1 54.1 1.0
ND1 E:HIS354 4.2 42.7 1.0
C5' E:GDP402 4.2 50.2 1.0
O5' E:GDP402 4.3 49.0 1.0
CG E:HIS354 4.3 40.9 1.0
CG E:GLU205 4.4 43.7 1.0
O E:HOH512 4.4 51.5 1.0
O2A E:GDP402 4.4 51.6 1.0
O2B E:GDP402 4.5 54.2 1.0
CB E:GLU205 4.5 42.7 1.0
C3' E:GDP402 4.6 49.4 1.0
O E:PRO206 4.9 46.2 1.0
C4' E:GDP402 4.9 49.7 1.0

Manganese binding site 6 out of 6 in 7bop

Go back to Manganese Binding Sites List in 7bop
Manganese binding site 6 out of 6 in the Crystal Structure of Core-Mannan Synthase A (Cmsa/KTR4) From Aspergillus Fumigatus, Mn/Gdp-Form


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Crystal Structure of Core-Mannan Synthase A (Cmsa/KTR4) From Aspergillus Fumigatus, Mn/Gdp-Form within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mn401

b:49.8
occ:1.00
O2B F:GDP402 1.9 54.7 1.0
OE1 F:GLU205 2.0 43.0 1.0
O2A F:GDP402 2.0 54.5 1.0
NE2 F:HIS354 2.1 42.4 1.0
O F:HOH568 2.2 43.8 1.0
O F:HOH532 2.3 50.9 1.0
CE1 F:HIS354 3.1 42.4 1.0
CD2 F:HIS354 3.2 40.5 1.0
CD F:GLU205 3.2 41.1 1.0
PB F:GDP402 3.3 54.3 1.0
PA F:GDP402 3.3 53.5 1.0
O3A F:GDP402 3.7 55.6 1.0
O3B F:GDP402 3.8 54.4 1.0
OE2 F:GLU205 3.9 46.1 1.0
O F:HOH576 4.1 49.3 1.0
ND1 F:HIS354 4.2 42.1 1.0
C5' F:GDP402 4.2 47.6 1.0
O5' F:GDP402 4.3 48.8 1.0
CG F:HIS354 4.3 39.0 1.0
CG F:GLU205 4.4 42.0 1.0
O F:HOH516 4.4 53.2 1.0
CB F:GLU205 4.5 40.8 1.0
O1A F:GDP402 4.5 52.8 1.0
O1B F:GDP402 4.5 55.2 1.0
C3' F:GDP402 4.7 46.8 1.0
O F:PRO206 4.8 40.8 1.0
C4' F:GDP402 4.9 46.9 1.0
CB F:ASN293 5.0 37.4 1.0

Reference:

D.Hira, T.Onoue, T.Oka. Structural Basis For the Core-Mannan Biosynthesis of Cell Wall Fungal-Type Galactomannan in Aspergillus Fumigatus . J.Biol.Chem. V. 295 15407 2020.
ISSN: ESSN 1083-351X
PubMed: 32873705
DOI: 10.1074/JBC.RA120.013742
Page generated: Sun Oct 6 08:10:20 2024

Last articles

Ca in 5N7D
Ca in 5N5P
Ca in 5N6N
Ca in 5N5K
Ca in 5N5W
Ca in 5N5J
Ca in 5N4L
Ca in 5N3Y
Ca in 5N31
Ca in 5N3V
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy