Atomistry » Manganese » PDB 6qv9-6ru4 » 6r2r
Atomistry »
  Manganese »
    PDB 6qv9-6ru4 »
      6r2r »

Manganese in PDB 6r2r: Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) in Complex with Prfmn (Purified in Dark) and Alphafluorocinnamic Acid

Enzymatic activity of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) in Complex with Prfmn (Purified in Dark) and Alphafluorocinnamic Acid

All present enzymatic activity of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) in Complex with Prfmn (Purified in Dark) and Alphafluorocinnamic Acid:
4.1.1.102;

Protein crystallography data

The structure of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) in Complex with Prfmn (Purified in Dark) and Alphafluorocinnamic Acid, PDB code: 6r2r was solved by S.S.Bailey, D.Leys, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.64 / 1.13
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.681, 63.945, 87.573, 90.00, 90.00, 90.00
R / Rfree (%) 11.9 / 14.2

Other elements in 6r2r:

The structure of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) in Complex with Prfmn (Purified in Dark) and Alphafluorocinnamic Acid also contains other interesting chemical elements:

Fluorine (F) 1 atom
Potassium (K) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) in Complex with Prfmn (Purified in Dark) and Alphafluorocinnamic Acid (pdb code 6r2r). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) in Complex with Prfmn (Purified in Dark) and Alphafluorocinnamic Acid, PDB code: 6r2r:

Manganese binding site 1 out of 1 in 6r2r

Go back to Manganese Binding Sites List in 6r2r
Manganese binding site 1 out of 1 in the Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) in Complex with Prfmn (Purified in Dark) and Alphafluorocinnamic Acid


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) in Complex with Prfmn (Purified in Dark) and Alphafluorocinnamic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn601

b:7.1
occ:1.00
 OD1 A:ASN168 2.1 7.5 1.0
OE2 A:GLU233 2.2 7.0 1.0
O9 A:BYN604 2.2 6.4 1.0
O A:HOH752 2.2 7.3 1.0
O A:HOH839 2.2 7.8 1.0
ND1 A:HIS191 2.3 7.3 1.0
CG A:ASN168 3.1 7.3 1.0
CD A:GLU233 3.2 7.1 1.0
CE1 A:HIS191 3.2 7.3 1.0
P1 A:BYN604 3.4 6.8 1.0
CG A:HIS191 3.4 7.0 1.0
ND2 A:ASN168 3.5 7.6 1.0
OE1 A:GLU233 3.5 7.3 1.0
O8 A:BYN604 3.6 7.7 1.0
K A:K602 3.7 7.4 1.0
CB A:HIS191 3.8 7.5 1.0
O10 A:BYN604 4.3 7.5 1.0
CG1 A:ILE227 4.3 8.6 1.0
O A:ILE227 4.3 7.8 1.0
CZ2 A:TRP166 4.4 8.9 1.0
NE2 A:HIS191 4.4 8.2 1.0
CB A:ASN168 4.4 7.4 1.0
O A:VAL231 4.5 9.0 1.0
CD2 A:HIS191 4.5 7.5 1.0
CG A:GLU233 4.5 7.4 1.0
O7 A:BYN604 4.5 7.0 1.0
O A:TRP169 4.6 6.9 1.0
NE1 A:TRP166 4.6 8.9 1.0
O A:PRO228 4.7 8.5 1.0
CE2 A:TRP166 4.9 8.7 1.0
CA A:ASN168 5.0 6.6 1.0

Reference:

S.S.Bailey, K.A.P.Payne, A.Saaret, S.A.Marshall, I.Gostimskaya, I.Kosov, K.Fisher, S.Hay, D.Leys. Atomic Description of An Enzyme Reaction Dependent on Reversible 1,3-Dipolar Cycloaddition To Be Published.
Page generated: Sun Oct 6 06:57:45 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy