Atomistry » Manganese » PDB 6q9p-6qv8 » 6quf
Atomistry »
  Manganese »
    PDB 6q9p-6qv8 »
      6quf »

Manganese in PDB 6quf: Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass

Enzymatic activity of Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass

All present enzymatic activity of Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass:
5.3.1.5;

Protein crystallography data

The structure of Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass, PDB code: 6quf was solved by B.D.Belviso, R.Caliandro, R.Caliandro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.93 / 1.19
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.522, 98.167, 101.851, 90.00, 90.00, 90.00
R / Rfree (%) 10.7 / 12.9

Manganese Binding Sites:

The binding sites of Manganese atom in the Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass (pdb code 6quf). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass, PDB code: 6quf:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 6quf

Go back to Manganese Binding Sites List in 6quf
Manganese binding site 1 out of 2 in the Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:9.6
occ:0.47
 OE1 A:GLU217 2.0 12.9 1.0
HE2 A:HIS220 2.0 12.4 0.0
O A:HOH798 2.2 15.2 0.9
OD2 A:ASP255 2.2 21.1 1.0
OD1 A:ASP255 2.3 18.7 1.0
OD1 A:ASP257 2.3 15.0 1.0
CG A:ASP255 2.5 16.8 1.0
NE2 A:HIS220 2.7 12.4 1.0
CD A:GLU217 3.0 8.9 1.0
HD2 A:HIS220 3.1 8.8 1.0
CD2 A:HIS220 3.2 8.8 1.0
HD21 A:ASN247 3.3 7.4 0.0
CG A:ASP257 3.3 12.6 1.0
OE2 A:GLU217 3.5 17.2 1.0
OD2 A:ASP257 3.5 20.0 1.0
O A:HOH778 3.6 25.8 1.0
CE1 A:HIS220 3.8 15.3 1.0
HD22 A:ASN247 3.8 7.4 0.0
ND2 A:ASN247 3.9 7.4 1.0
HO1 A:GOL404 4.0 15.4 0.0
HE3 A:LYS183 4.0 9.0 1.0
CB A:ASP255 4.0 12.4 1.0
HE1 A:HIS220 4.2 11.6 1.0
O A:HOH605 4.2 10.9 1.0
HZ1 A:LYS183 4.3 13.5 1.0
HG2 A:GLU217 4.3 6.8 1.0
CG A:GLU217 4.3 6.8 1.0
HB2 A:ASP255 4.3 10.4 1.0
O1 A:GOL404 4.4 15.4 0.9
CG A:HIS220 4.4 7.7 1.0
HB3 A:ASP255 4.5 12.0 1.0
HA A:ASP257 4.6 7.6 1.0
OD2 A:ASP287 4.6 12.0 1.0
HZ2 A:LYS183 4.6 12.4 1.0
CB A:ASP257 4.6 9.5 1.0
O A:HOH536 4.7 34.4 0.8
H A:ASP257 4.7 6.3 1.0
ND1 A:HIS220 4.7 9.9 1.0
NZ A:LYS183 4.8 14.2 1.0
CE A:LYS183 4.8 8.7 1.0
MN A:MN402 4.9 7.9 0.5
HA3 A:GLY219 4.9 5.4 1.0
HG3 A:GLU217 4.9 6.9 1.0
HA A:ASP255 4.9 8.6 1.0
CA A:ASP255 5.0 8.1 1.0
HZ3 A:LYS289 5.0 13.2 0.5
CA A:ASP257 5.0 7.3 1.0

Manganese binding site 2 out of 2 in 6quf

Go back to Manganese Binding Sites List in 6quf
Manganese binding site 2 out of 2 in the Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn402

b:7.9
occ:0.54
 OE2 A:GLU217 2.0 17.2 1.0
OD2 A:ASP287 2.0 12.0 1.0
OE2 A:GLU181 2.1 13.2 1.0
O2 A:GOL404 2.2 12.8 0.9
OD2 A:ASP245 2.2 11.3 1.0
O1 A:GOL404 2.2 15.4 0.9
HO2 A:GOL404 2.8 12.7 0.0
HO1 A:GOL404 2.8 15.4 0.0
CD A:GLU181 3.0 11.9 1.0
C1 A:GOL404 3.1 16.6 0.9
CG A:ASP287 3.1 7.9 1.0
C2 A:GOL404 3.1 13.8 0.9
CD A:GLU217 3.2 8.9 1.0
OE1 A:GLU181 3.3 10.6 1.0
H12 A:GOL404 3.3 16.4 0.9
CG A:ASP245 3.4 8.9 1.0
HB3 A:ASP287 3.4 6.8 1.0
HB2 A:GLU217 3.5 6.0 1.0
H2 A:GOL404 3.5 12.5 0.9
HB2 A:ASP287 3.5 6.8 1.0
HE1 A:HIS220 3.6 11.6 1.0
CB A:ASP287 3.6 6.6 1.0
HB3 A:ASP245 3.7 7.2 1.0
O A:HOH798 3.9 15.2 0.9
H11 A:GOL404 4.0 15.6 0.9
CB A:ASP245 4.0 7.2 1.0
HB2 A:ASP245 4.0 7.2 1.0
O A:HOH698 4.0 13.7 0.9
CE1 A:HIS220 4.0 15.3 1.0
OE1 A:GLU217 4.1 12.9 1.0
CG A:GLU217 4.1 6.8 1.0
CB A:GLU217 4.2 5.8 1.0
OD1 A:ASP287 4.2 8.2 1.0
HG3 A:GLU217 4.3 6.9 1.0
OD1 A:ASP245 4.4 9.8 1.0
CG A:GLU181 4.4 8.4 1.0
C3 A:GOL404 4.4 10.1 0.9
HE2 A:HIS220 4.5 12.4 0.0
HB3 A:GLU217 4.5 6.0 1.0
H31 A:GOL404 4.5 10.4 0.9
HD21 A:ASN215 4.5 9.6 0.0
NE2 A:HIS220 4.5 12.4 1.0
HG2 A:GLU181 4.6 8.7 1.0
HZ2 A:TRP16 4.6 7.3 1.0
HG3 A:GLU181 4.6 8.7 1.0
HD22 A:ASN215 4.7 9.6 0.0
H32 A:GOL404 4.8 10.2 0.9
ND1 A:HIS220 4.8 9.9 1.0
MN A:MN401 4.9 9.6 0.5
ND2 A:ASN215 4.9 9.6 1.0

Reference:

B.D.Belviso, R.Caliandro, S.M.Salehi, G.Di Profio, R.Caliandro. Protein Crystallization in Ionic-Liquid Hydrogel Composite Membranes Crystals 2019.
ISSN: ESSN 2073-4352
DOI: 10.3390/CRYST9050253
Page generated: Sat Aug 16 21:27:43 2025

Last articles

Br in 9R0Q
Br in 9J73
Br in 9BJ5
Br in 8Y72
Au in 9D33
As in 9O9I
Al in 9GSG
Zr in 1XC1
Zr in 6Y7P
Zr in 6GNL
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy