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Manganese in PDB 6kac: Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii

Enzymatic activity of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii

All present enzymatic activity of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii:
1.10.3.9;

Other elements in 6kac:

The structure of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii also contains other interesting chemical elements:

Magnesium (Mg) 198 atoms
Iron (Fe) 4 atoms
Calcium (Ca) 2 atoms
Chlorine (Cl) 4 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii (pdb code 6kac). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii, PDB code: 6kac:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Manganese binding site 1 out of 8 in 6kac

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Manganese binding site 1 out of 8 in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:48.9
occ:1.00
 MN1 A:OEX401 0.0 48.9 1.0
O1 A:OEX401 1.8 48.9 1.0
O3 A:OEX401 1.9 48.9 1.0
OE2 A:GLU189 1.9 32.3 1.0
NE2 A:HIS332 2.0 35.7 1.0
OD2 A:ASP342 2.0 41.0 1.0
O5 A:OEX401 2.7 48.9 1.0
MN2 A:OEX401 2.7 48.9 1.0
CG A:ASP342 2.9 41.0 1.0
CD2 A:HIS332 2.9 35.7 1.0
CE1 A:HIS332 3.0 35.7 1.0
CD A:GLU189 3.1 32.3 1.0
OD1 A:ASP342 3.2 41.0 1.0
MN3 A:OEX401 3.3 48.9 1.0
OE1 A:GLU333 3.4 41.9 1.0
O A:ALA344 3.6 42.6 1.0
O2 A:OEX401 3.7 48.9 1.0
NE2 A:HIS337 3.8 41.7 1.0
OE1 A:GLU189 3.8 32.3 1.0
CA1 A:OEX401 3.8 48.9 1.0
OE2 C:GLU342 3.9 40.4 1.0
CD A:GLU333 4.0 41.9 1.0
CG A:HIS332 4.1 35.7 1.0
ND1 A:HIS332 4.1 35.7 1.0
CG A:GLU189 4.2 32.3 1.0
CE1 A:HIS337 4.3 41.7 1.0
CB A:ASP342 4.3 41.0 1.0
OE1 C:GLU342 4.3 40.4 1.0
OE2 A:GLU333 4.5 41.9 1.0
CD C:GLU342 4.6 40.4 1.0
C A:ALA344 4.6 42.6 1.0
CG1 A:VAL185 4.8 26.0 1.0
CG A:GLU333 4.9 41.9 1.0

Manganese binding site 2 out of 8 in 6kac

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Manganese binding site 2 out of 8 in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:48.9
occ:1.00
 MN2 A:OEX401 0.0 48.9 1.0
OE1 C:GLU342 2.0 40.4 1.0
OD1 A:ASP342 2.0 41.0 1.0
O1 A:OEX401 2.0 48.9 1.0
O A:ALA344 2.0 42.6 1.0
O3 A:OEX401 2.1 48.9 1.0
O2 A:OEX401 2.1 48.9 1.0
OE2 C:GLU342 2.2 40.4 1.0
CD C:GLU342 2.3 40.4 1.0
C A:ALA344 2.7 42.6 1.0
MN1 A:OEX401 2.7 48.9 1.0
CG A:ASP342 2.9 41.0 1.0
MN3 A:OEX401 2.9 48.9 1.0
OD2 A:ASP342 3.2 41.0 1.0
NE2 A:HIS337 3.4 41.7 1.0
OE1 A:GLU333 3.4 41.9 1.0
CA1 A:OEX401 3.7 48.9 1.0
CG C:GLU342 3.7 40.4 1.0
CA A:ALA344 3.8 42.6 1.0
O5 A:OEX401 4.0 48.9 1.0
N A:ALA344 4.0 42.6 1.0
CD2 A:HIS337 4.2 41.7 1.0
CB A:ALA344 4.2 42.6 1.0
OE2 A:GLU189 4.3 32.3 1.0
CB A:ASP342 4.3 41.0 1.0
NH2 C:ARG345 4.4 28.9 1.0
CE1 A:HIS337 4.4 41.7 1.0
NE2 A:HIS332 4.5 35.7 1.0
CD A:GLU333 4.5 41.9 1.0
CB C:GLU342 4.5 40.4 1.0
O4 A:OEX401 4.7 48.9 1.0
CA A:ASP342 4.7 41.0 1.0
C A:ASP342 4.9 41.0 1.0
OE2 A:GLU333 4.9 41.9 1.0

Manganese binding site 3 out of 8 in 6kac

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Manganese binding site 3 out of 8 in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:48.9
occ:1.00
 MN3 A:OEX401 0.0 48.9 1.0
O2 A:OEX401 1.9 48.9 1.0
OE1 A:GLU333 2.0 41.9 1.0
OE2 C:GLU342 2.0 40.4 1.0
O3 A:OEX401 2.0 48.9 1.0
O4 A:OEX401 2.1 48.9 1.0
OE2 A:GLU333 2.2 41.9 1.0
O5 A:OEX401 2.3 48.9 1.0
CD A:GLU333 2.4 41.9 1.0
MN2 A:OEX401 2.9 48.9 1.0
MN4 A:OEX401 3.0 48.9 1.0
CD C:GLU342 3.3 40.4 1.0
OD1 A:ASP170 3.3 31.4 1.0
MN1 A:OEX401 3.3 48.9 1.0
NH2 C:ARG345 3.3 28.9 1.0
O1 A:OEX401 3.4 48.9 1.0
CA1 A:OEX401 3.5 48.9 1.0
CG A:GLU333 3.9 41.9 1.0
OE1 C:GLU342 4.0 40.4 1.0
OD2 A:ASP170 4.1 31.4 1.0
CG A:ASP170 4.1 31.4 1.0
O A:ALA344 4.1 42.6 1.0
CG C:GLU342 4.3 40.4 1.0
C A:ALA344 4.4 42.6 1.0
CZ C:ARG345 4.5 28.9 1.0
NE2 A:HIS332 4.7 35.7 1.0
CB A:GLU333 4.7 41.9 1.0
OE2 A:GLU189 4.7 32.3 1.0
CD2 A:HIS332 4.8 35.7 1.0
OD1 A:ASP342 4.8 41.0 1.0
NE2 A:HIS337 5.0 41.7 1.0
OD2 A:ASP342 5.0 41.0 1.0

Manganese binding site 4 out of 8 in 6kac

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Manganese binding site 4 out of 8 in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:48.9
occ:1.00
 MN4 A:OEX401 0.0 48.9 1.0
OD1 A:ASP170 2.0 31.4 1.0
O4 A:OEX401 2.2 48.9 1.0
OE2 A:GLU333 2.2 41.9 1.0
O5 A:OEX401 2.6 48.9 1.0
MN3 A:OEX401 3.0 48.9 1.0
CG A:ASP170 3.3 31.4 1.0
CD A:GLU333 3.4 41.9 1.0
O A:SER169 3.9 27.1 1.0
CA A:ASP170 3.9 31.4 1.0
OD2 A:ASP170 4.1 31.4 1.0
OE1 A:GLU333 4.1 41.9 1.0
CB A:ASP170 4.1 31.4 1.0
O2 A:OEX401 4.3 48.9 1.0
O A:HOH1026 4.4 35.2 1.0
C A:SER169 4.4 27.1 1.0
CG A:GLU333 4.4 41.9 1.0
N A:ASP170 4.4 31.4 1.0
CA1 A:OEX401 4.4 48.9 1.0
O3 A:OEX401 4.5 48.9 1.0
NH2 C:ARG345 4.8 28.9 1.0
OE2 C:GLU342 4.9 40.4 1.0
OG A:SER169 4.9 27.1 1.0

Manganese binding site 5 out of 8 in 6kac

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Manganese binding site 5 out of 8 in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:49.6
occ:1.00
 MN1 a:OEX401 0.0 49.6 1.0
O1 a:OEX401 1.8 49.6 1.0
O3 a:OEX401 1.9 49.6 1.0
OE2 a:GLU189 1.9 32.7 1.0
OD2 a:ASP342 2.0 41.1 1.0
NE2 a:HIS332 2.0 36.0 1.0
O5 a:OEX401 2.7 49.6 1.0
MN2 a:OEX401 2.8 49.6 1.0
CG a:ASP342 2.9 41.1 1.0
CD2 a:HIS332 2.9 36.0 1.0
CE1 a:HIS332 3.0 36.0 1.0
CD a:GLU189 3.1 32.7 1.0
OD1 a:ASP342 3.2 41.1 1.0
MN3 a:OEX401 3.3 49.6 1.0
OE1 a:GLU333 3.4 42.7 1.0
O a:ALA344 3.6 43.1 1.0
O2 a:OEX401 3.7 49.6 1.0
NE2 a:HIS337 3.8 41.7 1.0
OE1 a:GLU189 3.8 32.7 1.0
CA1 a:OEX401 3.8 49.6 1.0
OE2 c:GLU342 3.9 40.8 1.0
CD a:GLU333 4.0 42.7 1.0
CG a:HIS332 4.1 36.0 1.0
ND1 a:HIS332 4.1 36.0 1.0
CG a:GLU189 4.2 32.7 1.0
CE1 a:HIS337 4.3 41.7 1.0
CB a:ASP342 4.3 41.1 1.0
OE1 c:GLU342 4.3 40.8 1.0
OE2 a:GLU333 4.4 42.7 1.0
CD c:GLU342 4.6 40.8 1.0
C a:ALA344 4.6 43.1 1.0
CG1 a:VAL185 4.8 26.0 1.0
CG a:GLU333 4.8 42.7 1.0

Manganese binding site 6 out of 8 in 6kac

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Manganese binding site 6 out of 8 in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:49.6
occ:1.00
 MN2 a:OEX401 0.0 49.6 1.0
OE1 c:GLU342 2.0 40.8 1.0
OD1 a:ASP342 2.0 41.1 1.0
O1 a:OEX401 2.0 49.6 1.0
O a:ALA344 2.0 43.1 1.0
O3 a:OEX401 2.1 49.6 1.0
O2 a:OEX401 2.1 49.6 1.0
OE2 c:GLU342 2.2 40.8 1.0
CD c:GLU342 2.3 40.8 1.0
C a:ALA344 2.7 43.1 1.0
MN1 a:OEX401 2.8 49.6 1.0
CG a:ASP342 2.9 41.1 1.0
MN3 a:OEX401 2.9 49.6 1.0
OD2 a:ASP342 3.1 41.1 1.0
OE1 a:GLU333 3.4 42.7 1.0
NE2 a:HIS337 3.5 41.7 1.0
CA1 a:OEX401 3.7 49.6 1.0
CG c:GLU342 3.7 40.8 1.0
CA a:ALA344 3.8 43.1 1.0
O5 a:OEX401 4.0 49.6 1.0
N a:ALA344 4.1 43.1 1.0
CD2 a:HIS337 4.2 41.7 1.0
CB a:ALA344 4.2 43.1 1.0
OE2 a:GLU189 4.3 32.7 1.0
CB a:ASP342 4.3 41.1 1.0
NH2 c:ARG345 4.3 29.0 1.0
NE2 a:HIS332 4.5 36.0 1.0
CD a:GLU333 4.5 42.7 1.0
CE1 a:HIS337 4.5 41.7 1.0
CB c:GLU342 4.5 40.8 1.0
O4 a:OEX401 4.7 49.6 1.0
CA a:ASP342 4.7 41.1 1.0
C a:ASP342 4.9 41.1 1.0
OE2 a:GLU333 4.9 42.7 1.0

Manganese binding site 7 out of 8 in 6kac

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Manganese binding site 7 out of 8 in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:49.6
occ:1.00
 MN3 a:OEX401 0.0 49.6 1.0
O2 a:OEX401 1.9 49.6 1.0
OE1 a:GLU333 2.0 42.7 1.0
OE2 c:GLU342 2.0 40.8 1.0
O3 a:OEX401 2.0 49.6 1.0
O4 a:OEX401 2.1 49.6 1.0
OE2 a:GLU333 2.2 42.7 1.0
O5 a:OEX401 2.3 49.6 1.0
CD a:GLU333 2.4 42.7 1.0
MN2 a:OEX401 2.9 49.6 1.0
MN4 a:OEX401 3.0 49.6 1.0
CD c:GLU342 3.3 40.8 1.0
OD1 a:ASP170 3.3 31.7 1.0
NH2 c:ARG345 3.3 29.0 1.0
MN1 a:OEX401 3.3 49.6 1.0
O1 a:OEX401 3.4 49.6 1.0
CA1 a:OEX401 3.5 49.6 1.0
CG a:GLU333 3.9 42.7 1.0
OE1 c:GLU342 4.0 40.8 1.0
OD2 a:ASP170 4.1 31.7 1.0
CG a:ASP170 4.1 31.7 1.0
O a:ALA344 4.1 43.1 1.0
CG c:GLU342 4.3 40.8 1.0
C a:ALA344 4.4 43.1 1.0
CZ c:ARG345 4.5 29.0 1.0
CB a:GLU333 4.7 42.7 1.0
NE2 a:HIS332 4.7 36.0 1.0
OE2 a:GLU189 4.8 32.7 1.0
OD1 a:ASP342 4.8 41.1 1.0
CD2 a:HIS332 4.8 36.0 1.0
OD2 a:ASP342 5.0 41.1 1.0

Manganese binding site 8 out of 8 in 6kac

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Manganese binding site 8 out of 8 in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:49.6
occ:1.00
 MN4 a:OEX401 0.0 49.6 1.0
OD1 a:ASP170 2.0 31.7 1.0
O4 a:OEX401 2.2 49.6 1.0
OE2 a:GLU333 2.2 42.7 1.0
O5 a:OEX401 2.6 49.6 1.0
MN3 a:OEX401 3.0 49.6 1.0
CG a:ASP170 3.3 31.7 1.0
CD a:GLU333 3.4 42.7 1.0
O a:SER169 3.8 27.0 1.0
CA a:ASP170 3.9 31.7 1.0
OE1 a:GLU333 4.1 42.7 1.0
OD2 a:ASP170 4.1 31.7 1.0
CB a:ASP170 4.1 31.7 1.0
O2 a:OEX401 4.3 49.6 1.0
C a:SER169 4.3 27.0 1.0
O a:HOH1026 4.3 33.9 1.0
N a:ASP170 4.4 31.7 1.0
CG a:GLU333 4.4 42.7 1.0
CA1 a:OEX401 4.4 49.6 1.0
O3 a:OEX401 4.5 49.6 1.0
NH2 c:ARG345 4.8 29.0 1.0
OG a:SER169 4.9 27.0 1.0
OE2 c:GLU342 4.9 40.8 1.0

Reference:

X.Sheng, A.J.Li, D.F.Song, Z.F.Liu. Supramolecular Insights Intobasis of Light Harvesting For Photosystem II in Green Algae To Be Published.
Page generated: Sun Oct 6 05:17:56 2024

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