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Manganese in PDB 6h0b: Crystal Structure of the Human Galnac-T4 in Complex with Udp, Manganese and the Diglycopeptide 6.

Enzymatic activity of Crystal Structure of the Human Galnac-T4 in Complex with Udp, Manganese and the Diglycopeptide 6.

All present enzymatic activity of Crystal Structure of the Human Galnac-T4 in Complex with Udp, Manganese and the Diglycopeptide 6.:
2.4.1.41;

Protein crystallography data

The structure of Crystal Structure of the Human Galnac-T4 in Complex with Udp, Manganese and the Diglycopeptide 6., PDB code: 6h0b was solved by M.De Las Rivas, E.J.P.Daniel, H.Coelho, E.Lira-Navarrete, L.Raich, I.Companon, A.Diniz, L.Lagartera, J.Jimenez-Barbero, H.Clausen, C.Rovira, F.Marcelo, F.Corzana, T.A.Gerken, R.Hurtado-Guerrero, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 73.99 / 1.80
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 66.090, 81.332, 84.863, 65.55, 68.66, 74.31
R / Rfree (%) 19 / 23.8

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of the Human Galnac-T4 in Complex with Udp, Manganese and the Diglycopeptide 6. (pdb code 6h0b). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of the Human Galnac-T4 in Complex with Udp, Manganese and the Diglycopeptide 6., PDB code: 6h0b:

Manganese binding site 1 out of 1 in 6h0b

Go back to Manganese Binding Sites List in 6h0b
Manganese binding site 1 out of 1 in the Crystal Structure of the Human Galnac-T4 in Complex with Udp, Manganese and the Diglycopeptide 6.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Human Galnac-T4 in Complex with Udp, Manganese and the Diglycopeptide 6. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn601

b:60.2
occ:1.00
 O1A B:UDP602 2.2 37.6 1.0
O1B B:UDP602 2.2 36.1 1.0
NE2 B:HIS362 2.3 38.6 1.0
OD2 B:ASP227 2.3 36.4 1.0
O B:HOH739 2.4 35.8 1.0
NE2 B:HIS229 2.6 45.4 1.0
CE1 B:HIS362 3.1 37.0 1.0
PB B:UDP602 3.2 40.3 1.0
PA B:UDP602 3.3 39.8 1.0
CG B:ASP227 3.4 39.3 1.0
CD2 B:HIS362 3.4 38.0 1.0
CE1 B:HIS229 3.4 42.3 1.0
O3B B:UDP602 3.5 37.1 1.0
O3A B:UDP602 3.5 34.2 1.0
CD2 B:HIS229 3.6 42.6 1.0
O B:HOH907 3.9 41.4 1.0
CB B:ASP227 4.0 32.9 1.0
O1 B:EDO603 4.2 37.4 1.0
O B:HOH923 4.3 38.4 1.0
ND1 B:HIS362 4.3 34.8 1.0
OD1 B:ASP227 4.3 40.0 1.0
C5' B:UDP602 4.3 36.9 1.0
O5' B:UDP602 4.4 37.4 1.0
O2A B:UDP602 4.4 40.3 1.0
CG B:HIS362 4.5 34.9 1.0
ND1 B:HIS229 4.6 45.1 1.0
O2B B:UDP602 4.6 40.9 1.0
C2 B:EDO603 4.7 38.3 1.0
C1 B:EDO603 4.7 38.1 1.0
CG B:HIS229 4.7 39.6 1.0
C3' B:UDP602 4.9 37.9 1.0

Reference:

M.De Las Rivas, E.J.Paul Daniel, H.Coelho, E.Lira-Navarrete, L.Raich, I.Companon, A.Diniz, L.Lagartera, J.Jimenez-Barbero, H.Clausen, C.Rovira, F.Marcelo, F.Corzana, T.A.Gerken, R.Hurtado-Guerrero. Structural and Mechanistic Insights Into the Catalytic-Domain-Mediated Short-Range Glycosylation Preferences of Galnac-T4. Acs Cent Sci V. 4 1274 2018.
ISSN: ESSN 2374-7943
PubMed: 30276263
DOI: 10.1021/ACSCENTSCI.8B00488
Page generated: Sun Oct 6 04:47:10 2024

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