Manganese in PDB 6gx2: Blood Group Synthase Aaglyb in Complex with Udp-Galnac and Cryoprotected with Glycerol

The structure of Blood Group Synthase Aaglyb in Complex with Udp-Galnac and Cryoprotected with Glycerol, PDB code: 6gx2 was solved by J.Rocha, A.Royant, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 1.07
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	52.569, 148.682, 79.677, 90.00, 90.00, 90.00
R / Rfree (%)	11.2 / 13.4

The binding sites of Manganese atom in the Blood Group Synthase Aaglyb in Complex with Udp-Galnac and Cryoprotected with Glycerol (pdb code 6gx2). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Blood Group Synthase Aaglyb in Complex with Udp-Galnac and Cryoprotected with Glycerol, PDB code: 6gx2:

Manganese binding site 1 out of 1 in the Blood Group Synthase Aaglyb in Complex with Udp-Galnac and Cryoprotected with Glycerol


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Blood Group Synthase Aaglyb in Complex with Udp-Galnac and Cryoprotected with Glycerol within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn401 b:8.6 occ:1.00 O1B A:UDP402 2.1 10.7 1.0 OD2 A:ASP211 2.1 7.0 1.0 O1A A:UDP402 2.2 8.4 1.0 O A:HOH719 2.2 12.1 1.0 OD1 A:ASP213 2.2 8.6 1.0 OD2 A:ASP213 2.4 9.6 1.0 CG A:ASP213 2.7 7.6 1.0 CG A:ASP211 3.2 5.8 1.0 PB A:UDP402 3.3 10.9 1.0 PA A:UDP402 3.4 8.6 1.0 O3A A:UDP402 3.5 9.3 1.0 CB A:ASP211 3.6 5.8 1.0 O3' A:UDP402 3.8 7.0 1.0 O2B A:UDP402 3.9 16.2 1.0 O A:HOH791 3.9 35.6 1.0 CB A:ASP213 4.2 7.8 1.0 O A:HOH804 4.2 17.0 1.0 NZ A:LYS346 4.2 17.7 0.8 OD1 A:ASP211 4.3 6.6 1.0 O A:HOH680 4.3 16.8 0.5 C5' A:UDP402 4.3 7.5 1.0 O5' A:UDP402 4.4 8.1 1.0 O3B A:UDP402 4.5 13.6 1.0 O2A A:UDP402 4.5 9.8 1.0 C3' A:UDP402 4.6 6.6 1.0 CE A:LYS346 4.8 17.6 0.8 O A:HOH551 4.9 18.9 1.0 SD A:MET214 4.9 8.7 1.0 C1 A:GOL404 4.9 10.7 0.5 C4' A:UDP402 4.9 7.1 1.0 O A:ASP213 4.9 7.6 1.0 CB A:ALA268 5.0 5.8 1.0 N A:ASP213 5.0 6.3 1.0 CA A:ASP211 5.0 5.3 1.0

J.Rocha, G.O.Batot, M.M.Palcic, C.Breton, A.Royant. Blood Group Synthase Aaglyb in Complex with Udp-Galnac and Cryoprotected with Glycerol To Be Published.