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Manganese in PDB 6bv5: Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone

Enzymatic activity of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone

All present enzymatic activity of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone:
3.1.26.5;

Protein crystallography data

The structure of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone, PDB code: 6bv5 was solved by A.Karasik, N.Wu, C.A.Fierke, M.Koutmos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 87.08 / 1.79
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.616, 110.838, 140.743, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 22.3

Other elements in 6bv5:

The structure of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Chlorine (Cl) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone (pdb code 6bv5). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone, PDB code: 6bv5:

Manganese binding site 1 out of 1 in 6bv5

Go back to Manganese Binding Sites List in 6bv5
Manganese binding site 1 out of 1 in the Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn602

b:32.1
occ:1.00
 O A:HOH708 2.0 33.5 1.0
O A:HOH756 2.1 27.5 1.0
OD1 A:ASP475 2.2 29.7 1.0
O A:HOH703 2.2 29.4 1.0
O A:HOH715 2.3 33.0 1.0
O A:HOH930 2.3 35.3 1.0
CG A:ASP475 3.2 29.7 1.0
OD2 A:ASP475 3.5 29.1 1.0
HE1 A:TRP478 3.5 24.4 1.0
HZ2 A:TRP478 3.5 24.5 1.0
OD1 A:ASP474 4.0 32.3 1.0
O A:HOH721 4.1 37.5 1.0
OD2 A:ASP474 4.1 31.3 1.0
OD2 A:ASP493 4.1 32.1 1.0
OD2 A:ASP399 4.2 24.5 1.0
NE1 A:TRP478 4.3 24.4 1.0
HB3 A:ALA401 4.3 29.7 1.0
OD1 A:ASP399 4.3 24.4 1.0
CZ2 A:TRP478 4.3 24.5 1.0
O A:HOH887 4.3 43.7 1.0
O A:HOH767 4.4 48.0 1.0
CG A:ASP474 4.5 31.8 1.0
H A:ASP475 4.5 25.7 1.0
CB A:ASP475 4.6 28.0 1.0
HA A:ASP475 4.7 27.3 1.0
CG A:ASP399 4.7 22.7 1.0
CE2 A:TRP478 4.7 24.7 1.0
HB2 A:ASN402 4.7 27.2 1.0
N A:ASP475 4.9 25.7 1.0
CA A:ASP475 5.0 27.3 1.0

Reference:

N.Wu, A.Karasik, L.Muehlbauer, M.Koutmos, C.A.Fierke. Inhibition of Protein-Only Rnase P with Gambogic Acid and Juglone To Be Published.
Page generated: Sat Aug 16 19:55:02 2025

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