Manganese in PDB 6at2: E. Coli Phosphoenolpyruvate Carboxykinase G209N Mutant Bound to Thiosulfate

Enzymatic activity of E. Coli Phosphoenolpyruvate Carboxykinase G209N Mutant Bound to Thiosulfate

All present enzymatic activity of E. Coli Phosphoenolpyruvate Carboxykinase G209N Mutant Bound to Thiosulfate:
4.1.1.49;

Protein crystallography data

The structure of E. Coli Phosphoenolpyruvate Carboxykinase G209N Mutant Bound to Thiosulfate, PDB code: 6at2 was solved by H.Y.H.Tang, D.S.Shin, J.A.Tainer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	47.18 / 1.44
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	125.171, 94.360, 46.559, 90.00, 96.40, 90.00
*R / R_free (%)*	17.1 / 19.1

Other elements in 6at2:

The structure of E. Coli Phosphoenolpyruvate Carboxykinase G209N Mutant Bound to Thiosulfate also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the E. Coli Phosphoenolpyruvate Carboxykinase G209N Mutant Bound to Thiosulfate (pdb code 6at2). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the E. Coli Phosphoenolpyruvate Carboxykinase G209N Mutant Bound to Thiosulfate, PDB code: 6at2:

Manganese binding site 1 out of 1 in 6at2

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Manganese Binding Sites List in 6at2

Manganese binding site 1 out of 1 in the E. Coli Phosphoenolpyruvate Carboxykinase G209N Mutant Bound to Thiosulfate

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of E. Coli Phosphoenolpyruvate Carboxykinase G209N Mutant Bound to Thiosulfate within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mn702 b:12.7 occ:1.00	HZ1	A:LYS213	1.4	16.3	1.0
	NE2	A:HIS232	2.2	10.1	1.0
	O	A:HOH1010	2.2	13.4	1.0
	OD1	A:ASP269	2.2	12.1	1.0
	O3G	A:ATP701	2.2	15.1	1.0
	NZ	A:LYS213	2.3	13.6	1.0
	O	A:HOH1033	2.3	12.1	1.0
	HZ3	A:LYS213	2.6	16.3	1.0
	HZ2	A:LYS213	2.6	16.3	1.0
	CG	A:ASP269	3.0	15.2	1.0
	OD2	A:ASP269	3.2	13.6	1.0
	CE1	A:HIS232	3.2	13.1	1.0
	CD2	A:HIS232	3.2	13.2	1.0
	CE	A:LYS213	3.3	12.7	1.0
	HD2	A:HIS232	3.4	15.9	1.0
	PG	A:ATP701	3.4	11.9	1.0
	HE1	A:HIS232	3.4	15.7	1.0
	HE2	A:LYS213	3.4	15.2	1.0
	HE3	A:LYS213	3.4	15.2	1.0
	HZ1	A:LYS254	3.4	14.6	1.0
	HE3	A:LYS254	3.8	13.4	1.0
	O2G	A:ATP701	3.8	13.2	1.0
	O1G	A:ATP701	3.8	10.8	1.0
	HE2	A:LYS254	4.1	13.4	1.0
	O	A:HOH805	4.2	12.6	1.0
	NZ	A:LYS254	4.2	12.2	1.0
	CE	A:LYS254	4.2	11.2	1.0
	O	A:HOH1056	4.3	16.3	1.0
	ND1	A:HIS232	4.3	12.9	1.0
	HE2	A:PHE413	4.3	16.8	1.0
	CG	A:HIS232	4.4	12.7	1.0
	CB	A:ASP269	4.5	11.9	1.0
	HZ2	A:LYS254	4.6	14.6	1.0
	HB2	A:ASP269	4.6	14.3	1.0
	CD	A:LYS213	4.7	11.2	1.0
	HZ1	A:LYS212	4.7	23.8	1.0
	O3B	A:ATP701	4.7	13.9	1.0
	HZ	A:PHE413	4.8	16.8	1.0
	HZ3	A:LYS254	4.8	14.6	1.0
	CE2	A:PHE413	4.8	14.0	1.0
	HD2	A:LYS213	4.8	13.4	1.0
	HE3	A:LYS212	4.8	19.9	1.0
	HA	A:SER250	4.9	13.8	1.0
	HD3	A:LYS213	4.9	13.4	1.0
	HA	A:ASP269	4.9	16.8	1.0
	O	A:HOH1095	4.9	16.7	1.0
	MG	A:MG703	5.0	7.5	1.0

Reference:

H.Y.H.Tang, D.S.Shin, G.L.Hura, Y.Yang, X.Hu, F.C.Lightstone, M.D.Mcgee, H.S.Padgett, S.M.Yannone, J.A.Tainer. Structural Control of Nonnative Ligand Binding in Engineered Mutants of Phosphoenolpyruvate Carboxykinase. Biochemistry V. 57 6688 2018.
ISSN: ISSN 1520-4995
PubMed: 30376300
DOI: 10.1021/ACS.BIOCHEM.8B00963

Page generated: Sun Oct 6 03:53:46 2024

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