Manganese in PDB 5xyk: Structure of Transferase

The structure of Structure of Transferase, PDB code: 5xyk was solved by J.B.Park, Y.Yoo, J.Kim, H.S.Cho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	67.08 / 2.57
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	50.059, 50.059, 201.242, 90.00, 90.00, 120.00
R / Rfree (%)	26.1 / 28.6

The binding sites of Manganese atom in the Structure of Transferase (pdb code 5xyk). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Structure of Transferase, PDB code: 5xyk:

Manganese binding site 1 out of 1 in the Structure of Transferase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Transferase within 5.0Å range: probe atom residue distance (Å) B Occ E:Mn402 b:23.9 occ:1.00 OG E:SER340 1.6 22.4 1.0 O2A E:UDP403 2.0 23.8 1.0 O2B E:UDP403 2.3 21.4 1.0 OD2 E:ASP241 2.4 29.6 1.0 OD1 E:ASN338 2.4 17.9 1.0 CB E:SER340 3.0 22.8 1.0 CG E:ASP241 3.1 29.7 1.0 OD1 E:ASP241 3.2 35.1 1.0 PA E:UDP403 3.4 24.3 1.0 CG E:ASN338 3.6 19.9 1.0 PB E:UDP403 3.6 21.8 1.0 OD2 E:ASP239 3.6 20.7 1.0 CD E:ARG401 3.8 55.9 1.0 O3A E:UDP403 3.9 23.9 1.0 N E:SER340 4.0 22.9 1.0 CA E:SER340 4.0 23.4 1.0 N E:ARG401 4.0 53.6 1.0 O5' E:UDP403 4.4 24.1 1.0 CB E:ASN338 4.4 20.2 1.0 CA E:ASN338 4.4 20.6 1.0 C5' E:UDP403 4.4 23.6 1.0 OH E:TYR88 4.4 35.5 1.0 O1A E:UDP403 4.5 24.1 1.0 NH2 E:ARG401 4.5 45.8 1.0 O3B E:UDP403 4.5 22.3 1.0 CB E:ASP241 4.5 28.3 1.0 NE E:ARG401 4.5 55.4 1.0 ND2 E:ASN338 4.6 19.7 1.0 C E:ASN338 4.6 20.2 1.0 O1B E:UDP403 4.6 22.8 1.0 CG E:ASP239 4.7 19.1 1.0 C E:SER340 4.7 23.7 1.0 N E:SER341 4.8 25.3 1.0 CZ E:ARG401 4.8 47.8 1.0 CB E:ARG401 4.8 55.5 1.0 O E:ASN338 4.9 20.2 1.0 CG E:ARG401 4.9 56.8 1.0 N E:THR339 5.0 19.9 1.0

J.B.Park, Y.Yoo, J.Kim, H.S.Cho. Structure of Transferase To Be Published.