Manganese in PDB 5xeg: The Structure of OSALKBH1

The structure of The Structure of OSALKBH1, PDB code: 5xeg was solved by C.Wang, Y.Guo, Z.Zeng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	50.150, 67.729, 67.967, 90.00, 99.89, 90.00
R / Rfree (%)	16.1 / 20.8

The binding sites of Manganese atom in the The Structure of OSALKBH1 (pdb code 5xeg). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the The Structure of OSALKBH1, PDB code: 5xeg:

Manganese binding site 1 out of 1 in the The Structure of OSALKBH1


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Structure of OSALKBH1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn402 b:15.6 occ:1.00 OD1 A:ASP281 2.2 15.4 1.0 O A:HOH524 2.2 19.1 1.0 NE2 A:HIS339 2.2 15.4 1.0 O1 A:AKG401 2.3 19.7 1.0 NE2 A:HIS279 2.3 15.4 1.0 O5 A:AKG401 2.3 16.8 1.0 C2 A:AKG401 2.9 18.2 1.0 C1 A:AKG401 2.9 20.8 1.0 CG A:ASP281 3.1 19.6 1.0 CE1 A:HIS339 3.1 15.6 1.0 CD2 A:HIS339 3.2 17.2 1.0 CE1 A:HIS279 3.2 14.4 1.0 CD2 A:HIS279 3.2 15.2 1.0 OD2 A:ASP281 3.3 22.3 1.0 O2 A:AKG401 4.2 20.4 1.0 ND1 A:HIS339 4.2 15.6 1.0 CG A:HIS339 4.3 15.0 1.0 NH1 A:ARG369 4.3 27.4 1.0 ND1 A:HIS279 4.3 15.2 1.0 C3 A:AKG401 4.3 16.0 1.0 O A:HOH613 4.4 16.3 1.0 CG A:HIS279 4.4 14.6 1.0 O A:HOH622 4.4 26.1 1.0 CB A:ASP281 4.5 18.0 1.0 N A:ASP281 4.9 14.4 1.0 C4 A:AKG401 4.9 16.9 1.0 CA A:ASP281 5.0 16.6 1.0 CZ A:PHE330 5.0 18.8 1.0

C.Zhou, C.Wang, H.Liu, Q.Zhou, Q.Liu, Y.Guo, T.Peng, J.Song, J.Zhang, L.Chen, Y.Zhao, Z.Zeng, D.X.Zhou. Identification and Analysis of Adenine N6-Methylation Sites in the Rice Genome. Nat Plants V. 4 554 2018.
ISSN: ESSN 2055-0278
PubMed: 30061746
DOI: 10.1038/S41477-018-0214-X