Manganese in PDB 5fzd: Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate

The structure of Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate, PDB code: 5fzd was solved by R.Nowak, J.Kopec, C.Johansson, C.Gileadi, K.Kupinska, C.Strain-Damerell, A.Szykowska, F.Von Delft, N.A.Burgess-Brown, C.H.Arrowsmith, C.Bountra, A.M.Edwards, U.Oppermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.69 / 2.05
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	141.800, 141.800, 151.410, 90.00, 90.00, 120.00
R / Rfree (%)	19.6 / 23.5

The structure of Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate also contains other interesting chemical elements:

Zinc	(Zn)	2 atoms
Chlorine	(Cl)	1 atom

The binding sites of Manganese atom in the Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate (pdb code 5fzd). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate, PDB code: 5fzd:

Manganese binding site 1 out of 1 in the Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1756 b:37.5 occ:1.00 OE2 A:GLU501 2.1 37.3 1.0 NE2 A:HIS499 2.2 39.1 1.0 O A:HOH2136 2.2 46.2 1.0 NE2 A:HIS587 2.2 32.1 1.0 O3 A:S2G1771 2.3 43.6 1.0 O1 A:S2G1771 2.4 39.7 1.0 CE1 A:HIS499 3.0 41.2 1.0 C2 A:S2G1771 3.1 57.9 1.0 CE1 A:HIS587 3.1 32.8 1.0 CD A:GLU501 3.1 34.9 1.0 C1 A:S2G1771 3.2 51.6 1.0 CD2 A:HIS499 3.3 41.4 1.0 CD2 A:HIS587 3.3 31.8 1.0 OE1 A:GLU501 3.5 36.5 1.0 O A:HOH2272 4.1 59.3 1.0 ND1 A:HIS499 4.2 42.8 1.0 ND1 A:HIS587 4.2 29.8 1.0 O A:HOH2064 4.3 53.2 1.0 OG A:SER507 4.3 31.0 0.7 CG A:HIS499 4.3 41.4 1.0 CG A:HIS587 4.4 31.6 1.0 O2 A:S2G1771 4.4 44.8 1.0 CG A:GLU501 4.4 35.8 1.0 C3 A:S2G1771 4.5 51.2 1.0 C1 A:EDO1767 4.5 56.3 1.0 OG A:SER507 4.7 31.0 0.3 O1 A:EDO1767 4.8 53.0 1.0 CB A:SER507 4.8 32.4 0.3 CB A:SER507 4.8 32.4 0.7 C2 A:EDO1767 5.0 68.0 1.0

R.Nowak, J.Kopec, C.Johansson, C.Gileadi, K.Kupinska, C.Strain-Damerell, A.Szykowska, F.Von Delft, N.A.Burgess-Brown, C.H.Arrowsmith, C.Bountra, A.M.Edwards, U.Oppermann. Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate To Be Published.