Manganese in PDB 5a55: The Native Structure of GH101 From Streptococcus Pneumoniae TIGR4

Enzymatic activity of The Native Structure of GH101 From Streptococcus Pneumoniae TIGR4

All present enzymatic activity of The Native Structure of GH101 From Streptococcus Pneumoniae TIGR4:
3.2.1.97;

Protein crystallography data

The structure of The Native Structure of GH101 From Streptococcus Pneumoniae TIGR4, PDB code: 5a55 was solved by K.J.Gregg, M.D.L.Suits, L.Deng, D.J.Vocadlo, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	89.09 / 1.85
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	76.260, 89.130, 88.570, 90.00, 110.91, 90.00
*R / R_free (%)*	14.3 / 17.9

Other elements in 5a55:

The structure of The Native Structure of GH101 From Streptococcus Pneumoniae TIGR4 also contains other interesting chemical elements:

Calcium

(Ca)

4 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the The Native Structure of GH101 From Streptococcus Pneumoniae TIGR4 (pdb code 5a55). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the The Native Structure of GH101 From Streptococcus Pneumoniae TIGR4, PDB code: 5a55:

Manganese binding site 1 out of 1 in 5a55

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Manganese Binding Sites List in 5a55

Manganese binding site 1 out of 1 in the The Native Structure of GH101 From Streptococcus Pneumoniae TIGR4

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Native Structure of GH101 From Streptococcus Pneumoniae TIGR4 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mn2420 b:5.9 occ:1.00	OE1	A:GLU703	2.0	10.0	1.0
	NE2	A:HIS1258	2.1	6.7	1.0
	O	A:HOH3741	2.1	10.4	1.0
	OD2	A:ASP728	2.2	11.8	1.0
	O	A:HOH3740	2.3	7.6	1.0
	O	A:HOH3633	2.4	9.9	1.0
	CE1	A:HIS1258	3.0	6.4	1.0
	CD	A:GLU703	3.0	10.0	1.0
	CD2	A:HIS1258	3.1	6.2	1.0
	CG	A:ASP728	3.1	10.8	1.0
	OE2	A:GLU703	3.4	9.3	1.0
	OD1	A:ASP728	3.4	11.2	1.0
	ND1	A:HIS1258	4.1	6.3	1.0
	CG	A:HIS1258	4.2	6.2	1.0
	O	A:HOH3619	4.3	9.1	1.0
	CA	A:SER1260	4.3	7.5	1.0
	O	A:HOH3738	4.3	8.4	1.0
	O	A:LEU1259	4.3	7.3	1.0
	O	A:HOH4480	4.4	12.3	1.0
	CG	A:GLU703	4.4	9.7	1.0
	O	A:HOH3625	4.5	11.4	1.0
	CB	A:ASP728	4.5	10.3	1.0
	N	A:GLU1261	4.6	8.2	1.0
	CB	A:GLU703	4.7	10.3	1.0
	CB	A:SER1260	4.9	7.2	1.0
	CB	A:LEU727	4.9	8.3	1.0
	OG	A:SER659	4.9	8.0	1.0
	C	A:LEU1259	5.0	6.9	1.0

Reference:

K.J.Gregg, M.D.L.Suits, L.Deng, D.J.Vocadlo, A.B.Boraston. Structural Analysis of A Family 101 Glycoside Hydrolase in Complex with Carbohydrates Reveals Insights Into Its Mechanism. J.Biol.Chem. V. 290 25657 2015.
ISSN: ISSN 0021-9258
PubMed: 26304114
DOI: 10.1074/JBC.M115.680470

Page generated: Sat Oct 5 23:20:52 2024

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