Manganese in PDB 4zb2: A Native Form of Glucose Isomerase Collected at Room Temperature.

All present enzymatic activity of A Native Form of Glucose Isomerase Collected at Room Temperature.:
5.3.1.5;

The structure of A Native Form of Glucose Isomerase Collected at Room Temperature., PDB code: 4zb2 was solved by J.Sandy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	69.47 / 2.00
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	94.074, 99.225, 103.034, 90.00, 90.00, 90.00
R / Rfree (%)	10.6 / 14

The binding sites of Manganese atom in the A Native Form of Glucose Isomerase Collected at Room Temperature. (pdb code 4zb2). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the A Native Form of Glucose Isomerase Collected at Room Temperature., PDB code: 4zb2:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the A Native Form of Glucose Isomerase Collected at Room Temperature.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of A Native Form of Glucose Isomerase Collected at Room Temperature. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn401 b:10.5 occ:1.00 OE2 A:GLU181 2.0 11.8 1.0 OD2 A:ASP287 2.1 12.6 1.0 OD2 A:ASP245 2.1 9.6 1.0 O4 A:GLC403 2.1 12.6 1.0 OE1 A:GLU217 2.1 9.8 1.0 O3 A:GLC403 2.3 14.4 1.0 CD A:GLU181 3.0 11.5 1.0 C3 A:GLC403 3.1 14.9 1.0 C4 A:GLC403 3.1 14.5 1.0 CG A:ASP287 3.2 12.3 1.0 CG A:ASP245 3.3 9.7 1.0 OE1 A:GLU181 3.3 11.9 1.0 CD A:GLU217 3.3 9.4 1.0 CB A:ASP287 3.7 10.4 1.0 O A:HOH539 3.8 10.8 1.0 CB A:ASP245 3.9 8.5 1.0 CE1 A:HIS220 4.0 9.3 1.0 O A:HOH678 4.0 21.5 1.0 CG A:GLU217 4.1 8.3 1.0 CB A:GLU217 4.2 8.5 1.0 OE2 A:GLU217 4.3 9.6 1.0 OD1 A:ASP287 4.3 11.9 1.0 OD1 A:ASP245 4.3 10.0 1.0 CG A:GLU181 4.3 10.3 1.0 C5 A:GLC403 4.4 18.7 1.0 C2 A:GLC403 4.5 17.2 1.0 NE2 A:HIS220 4.6 9.3 1.0 MN A:MN402 4.7 10.4 1.0 ND1 A:HIS220 4.8 9.4 1.0

Manganese binding site 2 out of 2 in the A Native Form of Glucose Isomerase Collected at Room Temperature.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of A Native Form of Glucose Isomerase Collected at Room Temperature. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn402 b:10.4 occ:1.00 OE2 A:GLU217 2.1 9.6 1.0 OD1 A:ASP257 2.2 8.2 1.0 O A:HOH539 2.2 10.8 1.0 OD2 A:ASP255 2.3 10.9 1.0 OD1 A:ASP255 2.4 8.6 1.0 NE2 A:HIS220 2.4 9.3 1.0 CG A:ASP255 2.6 9.8 1.0 CD A:GLU217 2.9 9.4 1.0 CD2 A:HIS220 3.1 8.1 1.0 OE1 A:GLU217 3.1 9.8 1.0 CG A:ASP257 3.2 9.5 1.0 OD2 A:ASP257 3.3 11.4 1.0 CE1 A:HIS220 3.5 9.3 1.0 O A:HOH541 3.8 14.6 1.0 ND2 A:ASN247 4.0 8.2 1.0 O A:HOH568 4.0 10.9 1.0 O3 A:GLC403 4.1 14.4 1.0 CB A:ASP255 4.1 9.3 1.0 CG A:HIS220 4.3 8.2 1.0 CG A:GLU217 4.4 8.3 1.0 ND1 A:HIS220 4.4 9.4 1.0 OD2 A:ASP287 4.4 12.6 1.0 CB A:ASP257 4.6 8.2 1.0 O A:HOH545 4.6 24.9 1.0 MN A:MN401 4.7 10.5 1.0 CE A:LYS183 4.9 9.9 1.0 CA A:ASP255 5.0 8.0 1.0 CA A:ASP257 5.0 8.9 1.0

C.M.Lobley, J.Sandy, J.Sanchez-Weatherby, M.Mazzorana, T.Krojer, R.P.Nowak, T.L.Sorensen. A Generic Protocol For Protein Crystal Dehydration Using the HC1B Humidity Controller. Acta Crystallogr D Struct V. 72 629 2016BIOL.
ISSN: ISSN 2059-7983
PubMed: 27139626
DOI: 10.1107/S2059798316003065