Atomistry » Manganese » PDB 4ee3-4fo6 » 4fo6
Atomistry »
  Manganese »
    PDB 4ee3-4fo6 »
      4fo6 »

Manganese in PDB 4fo6: Crystal Structure of the Pre-Catalytic Ternary Complex of Polymerase Lambda with A Datp Analog Opposite A Templating T and An Rcmp at the Primer Terminus.

Enzymatic activity of Crystal Structure of the Pre-Catalytic Ternary Complex of Polymerase Lambda with A Datp Analog Opposite A Templating T and An Rcmp at the Primer Terminus.

All present enzymatic activity of Crystal Structure of the Pre-Catalytic Ternary Complex of Polymerase Lambda with A Datp Analog Opposite A Templating T and An Rcmp at the Primer Terminus.:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of the Pre-Catalytic Ternary Complex of Polymerase Lambda with A Datp Analog Opposite A Templating T and An Rcmp at the Primer Terminus., PDB code: 4fo6 was solved by R.A.Gosavi, A.F.Moon, T.A.Kunkel, L.C.Pedersen, K.Bebenek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.03 / 2.01
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.780, 63.655, 141.470, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 23.1

Other elements in 4fo6:

The structure of Crystal Structure of the Pre-Catalytic Ternary Complex of Polymerase Lambda with A Datp Analog Opposite A Templating T and An Rcmp at the Primer Terminus. also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Chlorine (Cl) 1 atom
Sodium (Na) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of the Pre-Catalytic Ternary Complex of Polymerase Lambda with A Datp Analog Opposite A Templating T and An Rcmp at the Primer Terminus. (pdb code 4fo6). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of the Pre-Catalytic Ternary Complex of Polymerase Lambda with A Datp Analog Opposite A Templating T and An Rcmp at the Primer Terminus., PDB code: 4fo6:

Manganese binding site 1 out of 1 in 4fo6

Go back to Manganese Binding Sites List in 4fo6
Manganese binding site 1 out of 1 in the Crystal Structure of the Pre-Catalytic Ternary Complex of Polymerase Lambda with A Datp Analog Opposite A Templating T and An Rcmp at the Primer Terminus.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Pre-Catalytic Ternary Complex of Polymerase Lambda with A Datp Analog Opposite A Templating T and An Rcmp at the Primer Terminus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn604

b:18.9
occ:1.00
OD2 A:ASP427 2.0 23.0 1.0
OD2 A:ASP429 2.2 18.2 1.0
OD2 A:ASP490 2.2 22.6 1.0
O3' P:C6 2.2 14.0 1.0
O A:HOH823 2.2 18.4 1.0
O1A A:F2A606 2.3 11.2 1.0
CG A:ASP427 3.0 22.9 1.0
CG A:ASP429 3.1 19.4 1.0
CG A:ASP490 3.2 24.3 1.0
PA A:F2A606 3.4 19.3 1.0
OD1 A:ASP427 3.4 17.4 1.0
OD1 A:ASP429 3.4 16.1 1.0
C3' P:C6 3.4 15.3 1.0
O2A A:F2A606 3.4 21.9 1.0
MG A:MG601 3.5 15.8 1.0
CB A:ASP490 3.9 17.2 1.0
O5' A:F2A606 3.9 19.4 1.0
C4' P:C6 4.0 15.0 1.0
C5' P:C6 4.1 20.0 1.0
C5' A:F2A606 4.1 19.2 1.0
O A:HOH782 4.1 23.7 1.0
OD1 A:ASP490 4.2 21.4 1.0
CB A:ASP427 4.4 16.6 1.0
CB A:ASP429 4.5 20.9 1.0
NH2 A:ARG488 4.6 20.2 1.0
O5' P:C6 4.6 21.9 1.0
C2' P:C6 4.7 21.6 1.0
O3G A:F2A606 4.8 19.1 1.0
O2' P:C6 4.8 23.4 1.0
O2B A:F2A606 4.9 18.7 1.0
C3A A:F2A606 4.9 15.3 1.0
OP1 P:C6 5.0 19.9 1.0

Reference:

R.A.Gosavi, A.F.Moon, T.A.Kunkel, L.C.Pedersen, K.Bebenek. The Catalytic Cycle For Ribonucleotide Incorporation By Human Dna Pol Lambda Nucleic Acids Res. V. 40 1 2012.
ISSN: ISSN 0305-1048
PubMed: 22584622
DOI: 10.1093/NAR/GKS413
Page generated: Sat Oct 5 19:26:43 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy