Manganese in PDB 3uag: Udp-N-Acetylmuramoyl-L-Alanine:D-Glutamate Ligase

All present enzymatic activity of Udp-N-Acetylmuramoyl-L-Alanine:D-Glutamate Ligase:
6.3.2.9;

The structure of Udp-N-Acetylmuramoyl-L-Alanine:D-Glutamate Ligase, PDB code: 3uag was solved by J.A.Bertrand, G.Auger, L.Martin, E.Fanchon, D.Blanot, D.Le Beller, J.Vanheijenoort, O.Dideberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 1.77
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	65.240, 65.240, 134.410, 90.00, 90.00, 90.00
R / Rfree (%)	17.8 / 22.2

The binding sites of Manganese atom in the Udp-N-Acetylmuramoyl-L-Alanine:D-Glutamate Ligase (pdb code 3uag). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Udp-N-Acetylmuramoyl-L-Alanine:D-Glutamate Ligase, PDB code: 3uag:

Manganese binding site 1 out of 1 in the Udp-N-Acetylmuramoyl-L-Alanine:D-Glutamate Ligase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Udp-N-Acetylmuramoyl-L-Alanine:D-Glutamate Ligase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1000 b:12.8 occ:1.00 O20 A:UMA450 2.0 11.2 1.0 NE2 A:HIS183 2.1 7.1 1.0 O A:HOH716 2.1 10.1 1.0 O A:HOH712 2.2 8.4 1.0 O A:HOH600 2.2 10.9 1.0 O A:HOH837 2.2 9.0 1.0 C22 A:UMA450 2.9 11.3 1.0 CE1 A:HIS183 3.0 8.5 1.0 CD2 A:HIS183 3.2 7.4 1.0 O19 A:UMA450 3.4 10.2 1.0 OD2 A:ASP182 3.6 8.6 1.0 O A:HOH819 3.9 12.9 1.0 OQ1 A:KCX198 4.0 6.9 1.0 C21 A:UMA450 4.1 9.3 1.0 O A:HOH768 4.1 20.7 1.0 NZ A:LYS115 4.2 5.9 1.0 ND1 A:HIS183 4.2 8.2 1.0 C23 A:UMA450 4.2 8.4 1.0 O A:HOH598 4.2 12.8 1.0 OQ2 A:KCX198 4.3 7.1 1.0 O A:HOH713 4.3 7.7 1.0 CG A:HIS183 4.3 8.2 1.0 CG A:ASP182 4.4 8.8 1.0 CX A:KCX198 4.6 7.3 1.0 O A:SER112 4.8 8.1 1.0 OD1 A:ASP182 4.9 9.0 1.0 NZ A:LYS348 4.9 6.7 1.0 CE A:LYS115 4.9 5.1 1.0

J.A.Bertrand, G.Auger, L.Martin, E.Fanchon, D.Blanot, D.Le Beller, J.Van Heijenoort, O.Dideberg. Determination of the Murd Mechanism Through Crystallographic Analysis of Enzyme Complexes. J.Mol.Biol. V. 289 579 1999.
ISSN: ISSN 0022-2836
PubMed: 10356330
DOI: 10.1006/JMBI.1999.2800