Manganese in PDB 3srz: Clostridium Difficile Toxin A (Tcda) Glucolsyltransferase Domain Bound to Udp-Glucose

The structure of Clostridium Difficile Toxin A (Tcda) Glucolsyltransferase Domain Bound to Udp-Glucose, PDB code: 3srz was solved by R.N.Pruitt, N.M.Chumbler, M.A.Farrow, S.A.Seeback, D.B.Friedman, B.W.Spiller, D.B.Lacy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.93 / 2.58
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	141.779, 141.779, 63.351, 90.00, 90.00, 120.00
R / Rfree (%)	17.7 / 24.8

The binding sites of Manganese atom in the Clostridium Difficile Toxin A (Tcda) Glucolsyltransferase Domain Bound to Udp-Glucose (pdb code 3srz). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Clostridium Difficile Toxin A (Tcda) Glucolsyltransferase Domain Bound to Udp-Glucose, PDB code: 3srz:

Manganese binding site 1 out of 1 in the Clostridium Difficile Toxin A (Tcda) Glucolsyltransferase Domain Bound to Udp-Glucose


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Clostridium Difficile Toxin A (Tcda) Glucolsyltransferase Domain Bound to Udp-Glucose within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1542 b:38.9 occ:1.00 OE1 A:GLU514 2.1 42.3 1.0 O1A A:UPG556 2.1 41.6 1.0 O1B A:UPG556 2.2 42.0 1.0 OD2 A:ASP287 2.2 32.3 1.0 O A:HOH589 2.2 35.4 1.0 O A:HOH614 2.3 39.1 1.0 CG A:ASP287 3.1 32.4 1.0 CD A:GLU514 3.2 41.5 1.0 OD1 A:ASP287 3.3 34.0 1.0 PA A:UPG556 3.4 43.4 1.0 PB A:UPG556 3.4 42.4 1.0 OE2 A:GLU514 3.7 42.6 1.0 O3A A:UPG556 3.7 33.4 1.0 O A:HOH616 3.9 41.7 1.0 O A:HOH578 4.0 35.1 1.0 OE1 A:GLN384 4.1 46.7 1.0 O2' A:UPG556 4.1 54.2 1.0 O2A A:UPG556 4.2 52.3 1.0 CA A:GLU514 4.2 49.8 1.0 O A:HOH606 4.2 34.0 1.0 OD2 A:ASP285 4.4 37.3 1.0 CG A:GLU514 4.4 42.3 1.0 O A:GLU514 4.4 61.0 1.0 O2B A:UPG556 4.4 41.4 1.0 O3B A:UPG556 4.4 55.4 1.0 CB A:ASP287 4.5 38.7 1.0 CB A:GLU514 4.5 49.6 1.0 O5C A:UPG556 4.5 33.2 1.0 C5C A:UPG556 4.6 37.2 1.0 C A:GLU514 4.8 52.8 1.0 O A:ASN516 4.9 93.1 1.0

R.N.Pruitt, N.M.Chumbler, S.A.Rutherford, M.A.Farrow, D.B.Friedman, B.Spiller, D.B.Lacy. Structural Determinants of Clostridium Difficile Toxin A Glucosyltransferase Activity. J.Biol.Chem. V. 287 8013 2012.
ISSN: ISSN 0021-9258
PubMed: 22267739
DOI: 10.1074/JBC.M111.298414