Atomistry » Manganese » PDB 3rla-3sx3 » 3rrd
Atomistry »
  Manganese »
    PDB 3rla-3sx3 »
      3rrd »

Manganese in PDB 3rrd: Native Structure of Dioclea Virgata Lectin

Protein crystallography data

The structure of Native Structure of Dioclea Virgata Lectin, PDB code: 3rrd was solved by P.Delatorre, R.B.Nobrega, C.A.A.Gadelha, T.Santi-Gadelha, D.L.Farias, B.A.M.Rocha, B.S.Cavada, C.S.Nagano, E.H.S.Bezerra, M.J.Bezerra, K.L.Alencar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.35 / 2.46
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 61.890, 87.670, 88.780, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 22.6

Other elements in 3rrd:

The structure of Native Structure of Dioclea Virgata Lectin also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Native Structure of Dioclea Virgata Lectin (pdb code 3rrd). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Native Structure of Dioclea Virgata Lectin, PDB code: 3rrd:

Manganese binding site 1 out of 1 in 3rrd

Go back to Manganese Binding Sites List in 3rrd
Manganese binding site 1 out of 1 in the Native Structure of Dioclea Virgata Lectin


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Native Structure of Dioclea Virgata Lectin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn238

b:20.1
occ:1.00
NE2 A:HIS24 2.1 14.6 1.0
OD2 A:ASP10 2.1 17.2 1.0
OD1 A:ASP19 2.2 16.7 1.0
OE2 A:GLU8 2.3 14.6 1.0
O A:HOH300 2.6 17.9 1.0
CG A:ASP19 3.0 19.3 1.0
CE1 A:HIS24 3.1 14.4 1.0
CD2 A:HIS24 3.1 14.7 1.0
CD A:GLU8 3.1 14.0 1.0
OE1 A:GLU8 3.3 15.8 1.0
CG A:ASP10 3.3 13.8 1.0
OD2 A:ASP19 3.4 19.2 1.0
CB A:ASP10 3.8 12.0 1.0
CA A:CA239 4.2 21.1 1.0
ND1 A:HIS24 4.2 15.6 1.0
CG A:HIS24 4.2 15.4 1.0
OG A:SER34 4.2 9.8 1.0
CB A:ASP19 4.3 19.2 1.0
OD1 A:ASP10 4.3 13.6 1.0
O A:VAL32 4.4 15.2 1.0
CG A:GLU8 4.5 9.4 1.0
CA A:ASP19 4.7 19.2 1.0

Reference:

R.Batista Da Nobrega, B.A.Rocha, C.A.Gadelha, T.Santi-Gadelha, A.F.Pires, A.M.Assreuy, K.S.Nascimento, C.S.Nagano, A.H.Sampaio, B.S.Cavada, P.Delatorre. Structure of Dioclea Virgata Lectin: Relations Between Carbohydrate Binding Site and Nitric Oxide Production. Biochimie V. 94 900 2012.
ISSN: ISSN 0300-9084
PubMed: 22198239
DOI: 10.1016/J.BIOCHI.2011.12.009
Page generated: Sat Oct 5 17:50:06 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy